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One error problem occurred caused by data type during using GDCprepare to handle BRCA data
GDCRNATools
TCGA
1 day ago
glaciya2018
• 0
0
votes
0
replies
25
views
Differential splicing from SGSeq analysis
DEXSeq
SGSeq
2 days ago
Sara
• 0
0
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0
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35
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Exon-exon Junction Analysis for Variable-length Exons
Rsubread
2 days ago
Dario Strbenac
★ 1.5k
0
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8
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249
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DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 2 days ago by
swbarnes2
★ 1.3k • written 3 days ago by
Aaliya
• 0
0
votes
2
replies
141
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
4 days ago • updated 1 day ago
shuwangxinze1996
• 0
1
vote
13
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292
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Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
5 days ago • updated 2 days ago
fernanda.backsouza
▴ 10
0
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0
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45
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Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
5 days ago
vaxahey107
• 0
0
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0
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63
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I am trying to detect alternative splicing.
ASpli
6 days ago
Sebashish
• 0
0
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4
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201
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
9 days ago • updated 6 days ago
lonn
• 0
1
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3
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818
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 2 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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