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ALDEx2
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Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
2.6 years ago
amir
• 0
0
votes
3
replies
3.7k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.9 years ago by
Lucie
• 0 • written 3.2 years ago by
RvH
• 0
0
votes
0
replies
1.1k
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ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
Metagenomics
IQLR
ALDEx2
3.2 years ago
cwarden45
• 0
1
vote
4
replies
2.2k
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How to create an aldex.clr object from a "selex" data table
ALDEx2
3.7 years ago
Greg
• 0
0
votes
0
replies
1.0k
views
Aldex2 BioCParallel issues
aldex2
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
jc235601
▴ 20
2
votes
0
replies
1.3k
views
Aldex2 error following tutorial - complex study design
software error
aldex2
6.7 years ago
mstagliamonte
▴ 10
0
votes
0
replies
1.4k
views
Aldex2 feature request - controlling for additional variables
ALDEx2
ALDEx
microbiome
16s
7.2 years ago
mstagliamonte
▴ 10
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Comment: Region specific age contrasts in DEXSeq
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When analyzing complex biological data like transcript usage, ensuring you have the right tools is as essential as finding the DK11 Game do…
Answer: Unable to create venndiagram using VennDiagram 1.5.1 package
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Comment: How to convert .raw data for use in xcms
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try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…
Comment: Which preprocessing steps are needed before running limpa?
by
miro165sabo
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Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
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A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
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