Bioconductor ALDEx2

Showing : ALDEx2 • reset

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1.1k

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ALDEx2 modelmatrix covariates

2.3 years ago amir • 0

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3.3k

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MicrobiomeData ALDEx2

updated 2.6 years ago by Lucie • 0 • written 2.9 years ago by RvH • 0

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1.0k

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Metagenomics IQLR ALDEx2

2.9 years ago cwarden45 • 0

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ALDEx2

3.4 years ago Greg • 0

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950

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aldex2

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by jc235601 ▴ 20

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1.2k

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software error aldex2

6.4 years ago mstagliamonte ▴ 10

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1.3k

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ALDEx2 ALDEx microbiome 16s

6.9 years ago mstagliamonte ▴ 10

7 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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