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ALDEx2
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Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
2.5 years ago
amir
• 0
0
votes
3
replies
3.5k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.8 years ago by
Lucie
• 0 • written 3.1 years ago by
RvH
• 0
0
votes
0
replies
1.1k
views
ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
Metagenomics
IQLR
ALDEx2
3.1 years ago
cwarden45
• 0
1
vote
4
replies
2.1k
views
How to create an aldex.clr object from a "selex" data table
ALDEx2
3.6 years ago
Greg
• 0
0
votes
0
replies
990
views
Aldex2 BioCParallel issues
aldex2
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
jc235601
▴ 20
2
votes
0
replies
1.3k
views
Aldex2 error following tutorial - complex study design
software error
aldex2
6.6 years ago
mstagliamonte
▴ 10
0
votes
0
replies
1.3k
views
Aldex2 feature request - controlling for additional variables
ALDEx2
ALDEx
microbiome
16s
7.1 years ago
mstagliamonte
▴ 10
7 results • Page
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Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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