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AUcell
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reset
2
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3
replies
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Applicability of AUCell to bulk RNA-seq
AUCell
AUcell
12 months ago • updated 11 months ago
Lucy
▴ 60
3
votes
1
reply
523
views
Should I set a seed prior to running AUCell?
AUCell
updated 21 months ago by
ATpoint
★ 4.2k • written 21 months ago by
Lucy
▴ 60
1
vote
5
replies
1.6k
views
RcisTarget error with multicore processing
RcisTarget
aucell
SCENIC
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
jka8119
▴ 10
2
votes
4
replies
1.3k
views
Cannot install AUCell 1.2.2
AUCell
SCENIC
updated 6.2 years ago by
sara.aibar
▴ 10 • written 6.2 years ago by
Xingyu
• 0
4 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
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Michael Love
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