Bioconductor Affy

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GEO affy

29 days ago • updated 23 days ago Kurtis • 0

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maplot_function rma_function ExpressionSet MicroarrayData affy

5 weeks ago Mj.A. • 0

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359

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frmaTools affy

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by michelafrancesconi8 • 0

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603

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crlmm hapmapsnp6 genomewidesnp6Crlmm affy

updated 10 months ago by Kevin Blighe ★ 3.9k • written 10 months ago by Vincent J. Carey, Jr. 6.7k

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.1k • written 17 months ago by laujihen • 0

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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Pathways probe affy Pathways probe affy

written 17.6 years ago by mike Ad. ▴ 30

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1.2k

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affy affy

updated 8 weeks ago by Gordon Smyth 50k • written 19.0 years ago by SAURIN ★ 1.1k

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multtest affy multtest affy

updated 8 months ago by Amruta • 0 • written 20.7 years ago by Bob ▴ 20

9 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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