Showing : ExpressionSet • reset
0
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3
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1.5k
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[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 16 months ago by 64k • written 16 months ago by • 0
3
votes
9
replies
1.2k
views
How many features an ExpressionSet can contain ?
ExpressionSet
17 months ago OE • 0
0
votes
1
reply
569
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.0 years ago by 64k • written 3.0 years ago by • 0
5
votes
2
replies
718
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.3 years ago by 25k • written 3.3 years ago by ▴ 20
4
votes
8
replies
1.9k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 3.6 years ago by 48k • written 3.6 years ago by • 0
0
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1
reply
399
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
3.6 years ago aush ▴ 40
2
votes
2
replies
2.0k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 4.1 years ago by 64k • written 4.1 years ago by ▴ 20
0
votes
2
replies
859
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.2 years ago rezashiralmohammad • 0
0
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0
replies
667
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.3 years ago payam_delfani1980 • 0
5
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7
replies
1.3k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 20
0
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0
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742
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.4 years ago jirkanov • 0
0
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0
replies
844
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
5.7 years ago rf • 0
1
vote
10
replies
1.6k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
4
votes
3
replies
1.1k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.4 years ago by 64k • written 6.4 years ago by • 0
0
votes
6
replies
1.4k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.6 years ago by • 0 • written 6.8 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 6.6 years ago by 64k • written 6.6 years ago by ▴ 60
0
votes
1
reply
1.1k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 6.8 years ago by ▴ 820 • written 6.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
6.8 years ago andreas.pittroff • 0
3
votes
3
replies
1.7k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
6.9 years ago gabor.halasz • 0
0
votes
1
reply
808
views
beadarray error conversion
beadarray limma ExpressionSet
updated 7.0 years ago by 48k • written 7.0 years ago by • 0
1
vote
2
replies
2.8k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.1 years ago by 25k • written 7.1 years ago by ★ 3.8k
1
vote
3
replies
2.0k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 7.1 years ago by ▴ 820 • written 7.1 years ago by • 0
3
votes
5
replies
1.4k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by • 0
0
votes
0
replies
1.2k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.3 years ago Steffen Neumann ▴ 30
1
vote
1
reply
947
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 70
0
votes
1
reply
886
views
ExpressionSet: Internal Standard
expressionset
updated 7.5 years ago by 13k • written 7.5 years ago by • 0
0
votes
3
replies
2.3k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
7.5 years ago NS ▴ 60
1
vote
1
reply
943
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
7.6 years ago g_draculla ▴ 10
1
vote
2
replies
1.2k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 7.7 years ago by 64k • written 7.8 years ago by • 0
2
votes
4
replies
1.8k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 820
2
votes
5
replies
3.5k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
8.1 years ago • updated 8.0 years ago thrabe • 0
6
votes
7
replies
3.5k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
8.1 years ago martin.hoelzer ▴ 20
2
votes
1
reply
2.9k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.3 years ago by ★ 28k • written 8.3 years ago by ▴ 30
3
votes
10
replies
2.1k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
8.7 years ago svlachavas ▴ 820
34 results • Page 1 of 1
Recent ...
Replies
Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k
I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…
Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …
Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k
> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…
Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0
Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…
Answer: List of Deprecated Packages for Bioc3.18 by shepherl 3.6k
biomvRCNS has been fixed and is undeprecated
Votes
Answer: biomaRt not working - lazy table error
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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