Bioconductor AnnotationHubSoftware

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by fernanda.backsouza ▴ 30

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AnnotationHubSoftware SingleCellData annotationTools

updated 22 months ago by ATpoint ★ 4.9k • written 22 months ago by yw24418 • 0

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AnnotationHubSoftware ensembldb

updated 24 months ago by James W. MacDonald 68k • written 24 months ago by cjag • 0

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AnnotationHubSoftware GOSemSim annotation

3.6 years ago Amandeep • 0

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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0

Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…

Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0

Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0

Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …

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Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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