Bioconductor AnnotationHubSoftware

Showing : AnnotationHubSoftware • reset

1

vote

1

reply

462

views

KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by fernanda.backsouza ▴ 30

0

votes

2

replies

734

views

AnnotationHubSoftware SingleCellData annotationTools

updated 16 months ago by ATpoint ★ 4.7k • written 16 months ago by yw24418 • 0

0

votes

10

replies

1.4k

views

AnnotationHubSoftware ensembldb

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by cjag • 0

0

votes

0

replies

961

views

AnnotationHubSoftware GOSemSim annotation

3.1 years ago Amandeep • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Votes

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Awards • All

Popular Question to xiaofeiwang198266 • 0

Scholar to shepherl 4.1k

Popular Question to James W. MacDonald 68k