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annotationTools
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
6 months ago
Shane
• 0
2
votes
10
replies
736
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 7 months ago by
Guido Hooiveld
★ 3.2k • written 7 months ago by
Javan Okendo
• 0
0
votes
2
replies
470
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 15 months ago by
Mike Smith
★ 5.5k • written 15 months ago by
niyamurry
• 0
1
vote
3
replies
697
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 4.4 years ago by
James W. MacDonald
59k • written 4.4 years ago by
eleonoregravier
▴ 60
0
votes
4
replies
1.1k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 12.8 years ago by
Brad Ander
▴ 20 • written 12.8 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
852
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 12.9 years ago by
Alexandre Kuhn
▴ 20 • written 12.9 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
613
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
13.9 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
7 results • Page
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Answer: ashr vs apeglm for interaction data
by
Michael Love
36k
Can you show the MA plot for these two analyses? Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
Votes
Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
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