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annotationTools
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0
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 21 days ago by
ATpoint
★ 3.6k • written 22 days ago by
yw24418
• 0
0
votes
1
reply
216
views
Which species does GO.db use
GO.db
annotationTools
updated 4 months ago by
Lluís Revilla Sancho
▴ 720 • written 4 months ago by
youngleel
• 0
0
votes
3
replies
614
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 14 months ago by
James W. MacDonald
64k • written 14 months ago by
jt.cathey
• 0
0
votes
0
replies
654
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.1 years ago
Shane
• 0
2
votes
10
replies
2.0k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.1 years ago by
Guido Hooiveld
★ 3.8k • written 2.1 years ago by
Javan Okendo
• 0
0
votes
2
replies
957
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 2.9 years ago by
Mike Smith
★ 6.2k • written 2.9 years ago by
niyamurry
• 0
1
vote
3
replies
1.1k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 5.9 years ago by
James W. MacDonald
64k • written 5.9 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.4k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.3 years ago by
Brad Ander
▴ 20 • written 14.4 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.1k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.5 years ago by
Alexandre Kuhn
▴ 20 • written 14.5 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
880
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.4 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
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Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
• 0
This is the result i got when i only looked on day 04 for the gene in example 1 posted above dds_sub <- dds[, dds$date %in% c("day04"…
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
by
James W. MacDonald
64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
• 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B
by
Mike Smith
★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Votes
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
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