Bioconductor BSGenomeForge

Showing : BSGenomeForge • reset

vote

replies

278

views

BSgenome BSgenomeForge

updated 24 days ago by James W. MacDonald 68k • written 27 days ago by mat149 ▴ 80

votes

replies

1.7k

views

BSgenomeForge

updated 5 months ago by James W. MacDonald 68k • written 5 months ago by JABEZ RAJU • 0

votes

490

views

BSgenomeForge non-modelorganism unabletofindFTPdir

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Geetha • 0

votes

replies

652

views

BSgenomeForge

2.1 years ago Bruno • 0

votes

replies

2.9k

views

BSgenomeForge BSgenome

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by kyliecode • 0

votes

replies

2.4k

views

BSGenomeForge BSGenome

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by sieminsk • 0

votes

replies

2.2k

views

cleanUpdTSeq BSgenome BSgenomeForge

updated 6.6 years ago by Julie Zhu ★ 4.3k • written 6.6 years ago by danielle.bilodeau • 0

votes

replies

1.5k

views

BSgenomeForge

9.0 years ago • updated 8.9 years ago Vijay Lakhujani • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Awards • All