Bioconductor BSGenomeForge

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BSgenomeForge non-modelorganism unabletofindFTPdir

updated 7 weeks ago by Hervé Pagès 16k • written 7 weeks ago by Geetha • 0

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BSgenomeForge

15 months ago Bruno • 0

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BSgenomeForge BSgenome

updated 18 months ago by James W. MacDonald 67k • written 19 months ago by kyliecode • 0

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BSGenomeForge BSGenome

updated 3.7 years ago by Hervé Pagès 16k • written 3.7 years ago by sieminsk • 0

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cleanUpdTSeq BSgenome BSgenomeForge

updated 5.8 years ago by Julie Zhu ★ 4.3k • written 5.8 years ago by danielle.bilodeau • 0

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BSgenomeForge

8.3 years ago • updated 8.2 years ago Vijay Lakhujani • 0

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

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Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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