Bioconductor BSgenome.Hsapiens.UCSC.hg19

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BSgenome.Hsapiens.UCSC.hg19 AnnotationDbi

6 months ago Erica • 0

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BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub

20 months ago Lenny186 • 0

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BSgenome.Hsapiens.UCSC.hg19 HarvardX Introduction to Bioconductor

updated 22 months ago by James W. MacDonald 65k • written 3.7 years ago by m.steinruecke • 0

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BSgenome.Hsapiens.UCSC.hg19

updated 2.1 years ago by Hervé Pagès 16k • written 2.1 years ago by Bogdan ▴ 670

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BSgenome.Hsapiens.UCSC.hg19

updated 3.1 years ago by Cheyujlee • 0 • written 3.4 years ago by pegah.taklifi ▴ 30

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matchProbePair BSgenome Biostrings BSgenome.Hsapiens.UCSC.hg19

updated 5.0 years ago by James W. MacDonald 65k • written 5.0 years ago by svetlana.gorokhova • 0

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 6.5 years ago by Mike Smith ★ 6.5k • written 6.5 years ago by addyS • 0

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ucsc bsgenome.hsapiens.ucsc.hg19

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Sushant Pawar • 0

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BSgenome.Hsapiens.UCSC.hg19

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Julie Zhu ★ 4.3k

9 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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