Showing : BWA • reset
2
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4
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3.7k
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isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
bwa Rsamtools
4.8 years ago sbcn ▴ 80
0
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0
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1.6k
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problem for finding relative Version GTF file for my .fa file
alignment BWA Burrows-Wheeler Alignment Tool
7.5 years ago modarzi ▴ 10
1
vote
11
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3.7k
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rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread BWA NGS
updated 9.3 years ago by ★ 3.6k • written 9.4 years ago by ▴ 10
1
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1
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2.0k
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MeDIPS and use of the 'bwa' parameter
R medip-seq medips bwa
updated 9.4 years ago by ▴ 570 • written 9.4 years ago by • 0
0
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5
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5.6k
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bioconductor package for BWA-MEM ?
bwa ngs
updated 10.4 years ago by 53k • written 10.4 years ago by ▴ 50
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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