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BWA
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reset
2
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4
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2.7k
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isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
bwa
Rsamtools
3.6 years ago
sbcn
▴ 80
0
votes
0
replies
1.3k
views
problem for finding relative Version GTF file for my .fa file
alignment
BWA
Burrows-Wheeler Alignment Tool
6.4 years ago
modarzi
▴ 10
1
vote
11
replies
2.9k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread
BWA
NGS
updated 8.2 years ago by
Wei Shi
★ 3.6k • written 8.2 years ago by
tarek.mohamed
▴ 10
1
vote
1
reply
1.7k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 8.3 years ago by
Lukas Chavez
▴ 570 • written 8.3 years ago by
stb
• 0
0
votes
5
replies
5.0k
views
bioconductor package for BWA-MEM ?
bwa
ngs
updated 9.3 years ago by
Gordon Smyth
51k • written 9.3 years ago by
KB
▴ 50
5 results • Page
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Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
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