Bioconductor BWA

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3.1k

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bwa Rsamtools

4.0 years ago • updated 3.9 years ago sbcn ▴ 80

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1.4k

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alignment BWA Burrows-Wheeler Alignment Tool

6.7 years ago modarzi ▴ 10

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3.2k

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rsubread BWA NGS

updated 8.5 years ago by Wei Shi ★ 3.6k • written 8.6 years ago by tarek.mohamed ▴ 10

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1.7k

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R medip-seq medips bwa

updated 8.6 years ago by Lukas Chavez ▴ 570 • written 8.6 years ago by stb • 0

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5.2k

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bwa ngs

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by KB ▴ 50

5 results • Page 1 of 1

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Comment: Issue with DECIPHER::IdTaxa by Daniel • 0

The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

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Use of clusterProfiler : Error in testForValidKeytype(x, keytype)

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

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