Bioconductor BWA

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3.5k

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bwa Rsamtools

4.6 years ago sbcn ▴ 80

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1.5k

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alignment BWA Burrows-Wheeler Alignment Tool

7.4 years ago modarzi ▴ 10

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3.6k

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rsubread BWA NGS

updated 9.2 years ago by Wei Shi ★ 3.6k • written 9.2 years ago by tarek.mohamed ▴ 10

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1.9k

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R medip-seq medips bwa

updated 9.2 years ago by Lukas Chavez ▴ 570 • written 9.2 years ago by stb • 0

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5.5k

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bwa ngs

updated 10.2 years ago by Gordon Smyth 53k • written 10.2 years ago by KB ▴ 50

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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