Bioconductor BWA

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bwa Rsamtools

3.7 years ago sbcn ▴ 80

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alignment BWA Burrows-Wheeler Alignment Tool

6.4 years ago modarzi ▴ 10

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rsubread BWA NGS

updated 8.2 years ago by Wei Shi ★ 3.6k • written 8.3 years ago by tarek.mohamed ▴ 10

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R medip-seq medips bwa

updated 8.3 years ago by Lukas Chavez ▴ 570 • written 8.3 years ago by stb • 0

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5.0k

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bwa ngs

updated 9.3 years ago by Gordon Smyth 52k • written 9.3 years ago by KB ▴ 50

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Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…

Comment: lfcShrink and alpha value by cropero • 0

Thank you so much! Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…

Comment: pathview - multiple states by Philippine • 0

Thank you! Here a subset of genes that really works with "ame04145". data <- data.frame( EntrezID = c(100577548, 100577764, 406…

Comment: pathview - multiple states by Guido Hooiveld ★ 4.1k

A quick comment after I copied/pasted your code: when using `geneList1` in the 3rd code chunk I do **not** get a nice plot... I rather got …

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Adam • 0

Hi Aaron, Thanks a lot for your help! As you mentioned, I checked my data and it is "DelayedMatrix". I don't know the detailed differe…

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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