Bioconductor BWA

Showing : BWA • reset

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1.9k

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bwa Rsamtools

2.7 years ago sbcn ▴ 80

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953

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alignment BWA Burrows-Wheeler Alignment Tool

5.4 years ago modarzi ▴ 10

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2.3k

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rsubread BWA NGS

updated 7.2 years ago by Wei Shi ★ 3.5k • written 7.3 years ago by tarek.mohamed ▴ 10

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1.3k

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R medip-seq medips bwa

updated 7.3 years ago by Lukas Chavez ▴ 570 • written 7.3 years ago by stb • 0

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4.3k

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bwa ngs

updated 8.3 years ago by Gordon Smyth 49k • written 8.3 years ago by KB ▴ 50

5 results • Page 1 of 1

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Answer: WGCNA documentation not available by James W. MacDonald 64k

Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…

Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k

try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.

Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0

Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…

Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k

That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…

Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0

I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…

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Comment: DESeq2 - batch, condition and tissue information

Answer: ScRNAseq analysis scran :: quickcluster Error

Comment: Ensembl down???

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and

Comment: Ensembl down???

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