Showing : BatchQC • reset
2
votes
2
replies
535
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Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 6 months ago by ▴ 10 • written 7 months ago by • 0
2
votes
2
replies
638
views
How to remove batch effect to combine RNAseq data from 2 different experiments?
BatchQC BatchEffect RNASeq
updated 6 months ago by ▴ 10 • written 7 months ago by • 0
0
votes
5
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815
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all variables in design formula must be columns in colData (Deseq2) error
BatchQC batchinDeseq2. columnsincolData.
7 months ago Galina • 0
2
votes
3
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1.9k
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PCA for QC should include subset of top variable genes or full set of genes in RNAseq data?
BatchQC RNASeqData sva BatchEffect
updated 18 months ago by ★ 4.6k • written 18 months ago by ▴ 10
2
votes
1
reply
905
views
How to identify the batch informations from the sample ID?
TCGAbiolinks BatchQC BatchEffect
updated 16 months ago by • 0 • written 21 months ago by ▴ 200
2
votes
1
reply
1.1k
views
Produce quantile normalized expression values for use with BatchQC
BatchQC
updated 3.8 years ago by ★ 1.6k • written 3.8 years ago by • 0
0
votes
0
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936
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Export Results from BatchQC Shiny App
BatchQC RNA-seq R Shiny batch-effect
4.7 years ago manninm • 0
7 results • Page 1 of 1
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Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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