Showing : BioC2023 • reset
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
2.4 years ago Maria Doyle ▴ 110
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News: May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor Awards Bioc2023 Recognition
2.5 years ago shepherl 4.2k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
2.5 years ago Maria Doyle ▴ 110
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News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
2.5 years ago shepherl 4.2k
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News: Junior Developer or New Package Developer Award
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2.6 years ago • updated 2.5 years ago shepherl 4.2k
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
2.6 years ago • updated 2.5 years ago shepherl 4.2k
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News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
2.6 years ago • updated 2.5 years ago shepherl 4.2k
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News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
2.6 years ago • updated 2.5 years ago shepherl 4.2k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 16 months ago by • 0 • written 2.8 years ago by ▴ 110
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News: Seeking members for BioC2023 organizing committee
BioC2023 Bioconductor community
2.9 years ago Maria Doyle ▴ 110
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
3.1 years ago shepherl 4.2k
11 results • Page 1 of 1
Recent ...
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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