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News: Reminder: BioC2023 in-person registration closes 19th July!
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21 months ago Maria Doyle ▴ 100
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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23 months ago Maria Doyle ▴ 100
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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2.0 years ago • updated 23 months ago shepherl 4.1k
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News: Nominations for Bioconductor 2023 Awards!
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2.0 years ago • updated 23 months ago shepherl 4.1k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: Seeking members for BioC2023 organizing committee
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2.3 years ago • updated 2.2 years ago Maria Doyle ▴ 100
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News: Save the Date Bioc2023!
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2.5 years ago • updated 2.4 years ago shepherl 4.1k
11 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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