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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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News: Save the Date Bioc2023!
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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11 months ago Maria Doyle ▴ 70
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News: Bioconductor Long-term Contribution Award
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News: Reminder: BioC2023 in-person registration closes 19th July!
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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News: Junior Developer or New Package Developer Award
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News: Nominations for Bioconductor 2023 Awards!
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12 months ago • updated 11 months ago shepherl 3.8k
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Seeking members for BioC2023 organizing committee
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15 months ago Maria Doyle ▴ 70
11 results • Page 1 of 1
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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
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SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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Popular Question to tangming2005 ▴ 190
Popular Question to Ian D. ▴ 70
Popular Question to junhui.li11 • 0
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
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