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News: Save the Date Bioc2023!
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
10 months ago Maria Doyle ▴ 70
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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11 months ago shepherl 3.9k
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News: Junior Developer or New Package Developer Award
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News: Nominations for Bioconductor 2023 Awards!
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13 months ago • updated 12 months ago shepherl 3.9k
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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13 months ago • updated 12 months ago shepherl 3.9k
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News: Seeking members for BioC2023 organizing committee
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16 months ago Maria Doyle ▴ 70
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
12 months ago Maria Doyle ▴ 70
11 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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Teacher to Vincent J. Carey, Jr. 6.7k
Popular Question to Mike • -60
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