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News: Reminder: BioC2023 in-person registration closes 19th July!
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9 months ago Maria Doyle ▴ 70
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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11 months ago shepherl 3.9k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
11 months ago Maria Doyle ▴ 70
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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12 months ago • updated 11 months ago shepherl 3.9k
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News: Bioconductor Long-term Contribution Award
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12 months ago • updated 11 months ago shepherl 3.9k
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News: Nominations for Bioconductor 2023 Awards!
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12 months ago • updated 11 months ago shepherl 3.9k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
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News: Seeking members for BioC2023 organizing committee
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15 months ago Maria Doyle ▴ 70
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
18 months ago • updated 17 months ago shepherl 3.9k
11 results • Page 1 of 1
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Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result by Chris • 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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