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News: Reminder: BioC2023 in-person registration closes 19th July!
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15 months ago Maria Doyle ▴ 90
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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16 months ago Maria Doyle ▴ 90
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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News: Nominations for Bioconductor 2023 Awards!
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: Seeking members for BioC2023 organizing committee
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20 months ago Maria Doyle ▴ 90
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News: Save the Date Bioc2023!
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23 months ago shepherl 4.0k
11 results • Page 1 of 1
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Comment: Using Normalized Counts in DESeq2 by Michael Love 42k
Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…
Answer: Using Normalized Counts in DESeq2 by ATpoint ★ 4.5k
TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.
Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts? by Katherine • 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet by James W. MacDonald 67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
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Answer: When running contrasts, does it use normalized read counts?
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
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Popular Question to Michael Love 42k
Popular Question to Jonathan ▴ 10
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Popular Question to nromerov • 0
Scholar to James W. MacDonald 67k
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