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BiocFileCache
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reset
6
votes
12
replies
4.9k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 14 days ago
shepherl
3.9k
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
ZheFrench
▴ 50
3
votes
6
replies
1.3k
views
Caching bam index files using BiocFileCache
BiocFileCache
23 months ago • updated 19 months ago
kent.riemondy
▴ 20
0
votes
3
replies
703
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.2 years ago by
shepherl
3.9k • written 4.2 years ago by
Qiang
▴ 80
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
judith.risse
• 0
0
votes
1
reply
647
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.7 years ago by
Mike Smith
★ 6.5k • written 2.7 years ago by
pierrick.roger
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.9k
7 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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