Showing : BiocFileCache • reset
1
vote
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Caching bam index files using BiocFileCache
BiocFileCache
10 weeks ago kent.riemondy • 0
1
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8
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417
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biomaRt : No lock file for BiocFileCache
BiocFileCache biomaRt
updated 4 months ago by 25k • written 4 months ago by ▴ 30
0
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1
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305
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Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 11 months ago by ★ 5.7k • written 11 months ago by • 0
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2
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499
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Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta BiocFileCache
updated 16 months ago by 37k • written 16 months ago by • 0
0
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1
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446
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News: Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache AnnotationHub ExperimentHub cache
16 months ago shepherl 3.2k
0
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3
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269
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How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 2.4 years ago by 3.2k • written 2.4 years ago by ▴ 70
6 results • Page 1 of 1
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Comment: DEXseq error unable to find an inherited method for function NSBS for signature by ta_awwad ▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc by Michael Love 37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot by Michael Love 37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat by Michael Love 37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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