Bioconductor BiocFileCache

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rBLAST BiocFileCache

updated 11 weeks ago by shepherl 4.1k • written 11 weeks ago by Matthew Thornton ▴ 380

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1.6k

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AnnotationHub BiocFileCache

10 months ago Lluís Revilla Sancho ▴ 760

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7.9k

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BiocFileCache AnnotationHub ExperimentHub

18 months ago • updated 12 months ago shepherl 4.1k

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BiocFileCache

2.9 years ago • updated 2.6 years ago kent.riemondy ▴ 20

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3.7k

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BiocFileCache biomaRt

updated 3.1 years ago by Martin Morgan 25k • written 3.1 years ago by ZheFrench ▴ 60

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887

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BiocFileCache

updated 3.7 years ago by Mike Smith ★ 6.6k • written 3.7 years ago by pierrick.roger • 0

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tximeta BiocFileCache

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by judith.risse • 0

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1.5k

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BiocFileCache AnnotationHub ExperimentHub cache

4.1 years ago shepherl 4.1k

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1.0k

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BiocFileCache

updated 5.2 years ago by shepherl 4.1k • written 5.2 years ago by Qiang ▴ 80

9 results • Page 1 of 1

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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