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BiocFileCache
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1
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Caching bam index files using BiocFileCache
BiocFileCache
10 weeks ago
kent.riemondy
• 0
1
vote
8
replies
417
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biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 4 months ago by
Martin Morgan
25k • written 4 months ago by
ZheFrench
▴ 30
0
votes
1
reply
305
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Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 11 months ago by
Mike Smith
★ 5.7k • written 11 months ago by
pierrick.roger
• 0
0
votes
2
replies
499
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 16 months ago by
Michael Love
37k • written 16 months ago by
judith.risse
• 0
0
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1
reply
446
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
16 months ago
shepherl
3.2k
0
votes
3
replies
269
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How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 2.4 years ago by
shepherl
3.2k • written 2.4 years ago by
Qiang
▴ 70
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Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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