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Bioconducter
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4
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8
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2.0k
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R package installation error
HPC
R
Bioconducter
2.1 years ago
Jitendra
▴ 10
0
votes
3
replies
1.4k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.2 years ago by
Sean Davis
21k • written 2.2 years ago by
Jitendra
▴ 10
0
votes
0
replies
690
views
taxonomy download from NCBI based on geneID
biomartr
Bioconducter
4.7 years ago
Jitendra
▴ 10
0
votes
0
replies
549
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
2.1 years ago
Jitendra
▴ 10
0
votes
0
replies
542
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
13 months ago
Jitendra
▴ 10
5 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Usually I run `voomLmFit`, although in order to create the mean-variance trend plots for this particular post, I ran `voom`; I've checked -…
Comment: Error in champ.load(): The following specified files do not exist
by
Sherin
• 0
it worked! thank you so much!!
Comment: Multi factor design edgeR/Deseq2
by
Elizabeth
• 0
Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.
Comment: Input Question for deseq.r
by
ATpoint
★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Votes
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
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