Showing : BiomaRt • reset
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To biomaRt users of Ensembl BioMart archives.
biomaRt biomaRt
17.0 years ago steffen@stat.Berkeley.EDU ▴ 600
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Using wildcard with BiomaRt:getBM
biomaRt biomaRt
updated 17.0 years ago by ▴ 600 • written 17.0 years ago by ▴ 190
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Using GenomeGraphs effectively for generating publication quality pictures
affy biomaRt ideogram GenomeGraphs affy biomaRt ideogram GenomeGraphs
updated 17.0 years ago by ▴ 600 • written 17.0 years ago by ▴ 190
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biomaRt error
biomaRt biomaRt
updated 17.0 years ago by ★ 1.1k • written 17.0 years ago by ▴ 30
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biomaRt getFeature function
biomaRt biomaRt
17.0 years ago Paul Hammer ▴ 220
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biomaRt doesn't load RCurl automatically
SNP biomaRt SNP biomaRt
17.0 years ago Shi, Tao ▴ 720
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biomaRt get exon intron structure of a transcrit
Cancer biomaRt Cancer biomaRt
17.0 years ago Shi, Tao ▴ 720
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3
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2.9k
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issue of genome build versions when using biomaRt
biomaRt biomaRt
updated 17.0 years ago by 16k • written 17.0 years ago by ▴ 50
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biomaRt and Annotations
biomaRt biomaRt
17.1 years ago Droit Arnaud ▴ 130
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4
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How to get closest gene around chromosome location? [biomaRt]
Biostrings biomaRt Biostrings biomaRt
updated 17.1 years ago by 21k • written 17.1 years ago by ★ 4.1k
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overlapping genes with biomart
biomaRt biomaRt
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 210
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Problem using 'biol_process' filter in biomaRt
GO biomaRt GO biomaRt
17.1 years ago J.J.P.Lebrec@lumc.nl ▴ 30
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problem installing affycoretools in R in linux environment
GO biomaRt affycoretools GO biomaRt affycoretools
17.2 years ago James W. MacDonald 68k
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problem installing affycoretools in R in linux environment
GO Cancer biomaRt affycoretools GO Cancer biomaRt affycoretools
17.2 years ago rgentleman ★ 5.5k
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Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
Annotation GO Cancer GOstats biomaRt Annotation GO Cancer GOstats biomaRt
17.2 years ago Emmanuel Levy ▴ 270
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1.2k
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Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
17.2 years ago michael watson IAH-C ★ 3.4k
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biomart doesn't annotate all the genes queried -CEACAM6
Cancer hgu133plus2 annotate affy biomaRt Cancer hgu133plus2 annotate affy biomaRt
17.2 years ago Julian Lee ▴ 140
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Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 270
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Understanding the randomness of Biomart
biomaRt biomaRt
updated 17.3 years ago by ▴ 600 • written 17.3 years ago by ▴ 100
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1.6k
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biomaRt question -- not getting a gene
biomaRt biomaRt
updated 17.3 years ago by ▴ 600 • written 17.3 years ago by ▴ 210
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987
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question about biomaRt attributes
biomaRt biomaRt
17.3 years ago Elizabeth Purdom ▴ 210
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errors usage of local biomart database with biomaRt package
Annotation biomaRt Annotation biomaRt
17.3 years ago Faheem Mitha ▴ 20
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BiomaRt annotation for the affy6.0 snps
Annotation affy biomaRt Annotation affy biomaRt
updated 17.3 years ago by ▴ 40 • written 17.3 years ago by ▴ 320
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778
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Can't access biomaRt with mysql
biomaRt biomaRt
17.3 years ago Richard Pearson ▴ 390
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Using biomaRt to check probe locations
Annotation hgu133plus2 probe biomaRt Annotation hgu133plus2 probe biomaRt
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 100
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problems with GenomeGraphs
biomaRt GenomeGraphs biomaRt GenomeGraphs
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 600
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Question about "structure_exon_chrom_end" attributes in biomaRt
biomaRt biomaRt
17.3 years ago steffen@stat.Berkeley.EDU ▴ 600
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Question about "structure_exon_chrom_end" attributes in biomaRt
biomaRt biomaRt
17.3 years ago li lilingdu ▴ 450
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1.1k
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Can't access biomaRt with mysql
biomaRt biomaRt
updated 17.3 years ago by ▴ 150 • written 17.3 years ago by ▴ 390
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Help in BioMart
SNP biomaRt SNP biomaRt
17.3 years ago steffen@stat.Berkeley.EDU ▴ 600
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1.5k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
17.4 years ago steffen@stat.Berkeley.EDU ▴ 600
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
17.4 years ago steffen@stat.Berkeley.EDU ▴ 600
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1
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849
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ENSEMBL-centered annotations, how to?
Annotation biomaRt Annotation biomaRt
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ★ 4.1k
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1.0k
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biomaRt column order
biomaRt biomaRt
17.4 years ago Mark Robinson ★ 1.1k
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affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 30
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Find Affy probes within a particular region
Annotation GO Cancer biomaRt Annotation GO Cancer biomaRt
updated 17.4 years ago by 68k • written 17.4 years ago by ★ 1.9k
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'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
17.5 years ago Glazko, Galina ▴ 350
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GenBank RefSeq conversion
Annotation GO convert biomaRt Annotation GO convert biomaRt
17.5 years ago Sean Davis 21k
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1
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1.3k
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connect to HapMart with biomaRt
HapMap biomaRt HapMap biomaRt
updated 17.5 years ago by ▴ 500 • written 17.5 years ago by ▴ 390
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5
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2.4k
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converting gene name to affy probe
probe convert biomaRt probe convert biomaRt
17.6 years ago • updated 17.5 years ago Ruppert Valentino ▴ 270
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1.6k
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RCurl compilation error - fedora 7
biomaRt biomaRt
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 60
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2
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1.3k
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trouble getting connection to Ensembl using biomaRt
biomaRt biomaRt
updated 17.5 years ago by ▴ 500 • written 17.5 years ago by ▴ 730
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1.7k
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AffyID in biomaRt?
GO drosophila2 affy biomaRt GO drosophila2 affy biomaRt
updated 17.6 years ago by ▴ 500 • written 17.6 years ago by ▴ 320
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getGene function in biomaRt
affy biomaRt affy biomaRt
17.6 years ago Sean Davis 21k
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3.8k
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Retrieving genes by their genome locations in biomart
biomaRt biomaRt
17.6 years ago Steffen ▴ 500
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4
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2.2k
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Agilent IDs and biomaRt package
biomaRt biomaRt
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 10
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5
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1.9k
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too many biomaRt connections
biomaRt biomaRt
updated 17.6 years ago by ▴ 500 • written 17.6 years ago by ▴ 210
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1.1k
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To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure biomaRt Infrastructure biomaRt
17.7 years ago Steffen ▴ 500
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752
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[Fwd: [ensembl-dev] Ensembl downtime March 7-9]
biomaRt biomaRt
17.7 years ago Cei Abreu-Goodger ▴ 830
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1.5k
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BioConductor Developer Workshop Lausanne 2008 Info
SNP Annotation annaffy AnnBuilder biomaRt cellHTS2 SNP Annotation annaffy AnnBuilder
17.8 years ago Darlene Goldstein ▴ 230
1,082 results • Page 20 of 22
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Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
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The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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