Showing : BiomaRt • reset
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1.9k
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unable to find known entrezgene with biomaRt
biomaRt biomaRt
updated 17.9 years ago by 68k • written 17.9 years ago by ★ 1.4k
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0
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835
views
error with biomaRt in mysql mode
Cancer biomaRt Cancer biomaRt
17.9 years ago Janet Young ▴ 740
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1
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876
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error with biomaRt in mysql mode
Cancer biomaRt Cancer biomaRt
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 740
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2
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1.3k
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Filter out pombe probeset from cerevisiae probesets for yeast2 Affymetrix chip
Annotation yeast2 biomaRt Annotation yeast2 biomaRt
updated 18.0 years ago by ★ 7.2k • written 18.0 years ago by ▴ 90
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2
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1.8k
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biomaRt getBM errors
Annotation GO annotate AnnBuilder GOstats biomaRt Annotation GO annotate AnnBuilder
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 10
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Announcement: biomaRt attribute/filter name changes involving gene symbols
biomaRt biomaRt
18.0 years ago Steffen ▴ 500
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0
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699
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markersymol filter problem
Annotation biomaRt Annotation biomaRt
18.1 years ago Marc Carlson ★ 7.2k
0
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1
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3.7k
views
are older versions of Ensembl accessible with biomaRt?
biomaRt biomaRt
updated 18.1 years ago by ▴ 500 • written 18.1 years ago by ▴ 280
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3
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1.8k
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Biomart query in Web interface Vs. biomaRt package?
GO PROcess biomaRt GO PROcess biomaRt
updated 18.1 years ago by ▴ 500 • written 18.1 years ago by ▴ 30
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0
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1.1k
views
homologs for xenopus laevis
Xenopus laevis zebrafish biomaRt Xenopus laevis zebrafish biomaRt
18.2 years ago Mayte Suarez-Farinas ▴ 510
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0
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1.2k
views
biomaRt -> XML::addNode masks graph
SystemsBiology Cancer graph biomaRt SystemsBiology Cancer graph biomaRt
18.2 years ago Seth Falcon ★ 7.4k
0
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4
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2.6k
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disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 18.2 years ago by ▴ 500 • written 18.2 years ago by ★ 1.4k
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1
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1.5k
views
Getting top level GO category for a list of genes
GO graph biomaRt GO graph biomaRt
updated 18.2 years ago by ▴ 500 • written 18.2 years ago by ▴ 10
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1
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1.9k
views
biomaRt-chromosomal positions
biomaRt biomaRt
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 30
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3
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1.7k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 80
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0
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1.2k
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Biomart with human genes NCBI 35
Microarray Cancer biomaRt Microarray Cancer biomaRt
18.4 years ago Steffen Durinck ▴ 580
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1
reply
1.2k
views
question regarding ncbi gene2accession and annbuilder
Annotation AnnBuilder biomaRt Annotation AnnBuilder biomaRt
updated 18.4 years ago by ▴ 70 • written 18.4 years ago by ▴ 830
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6
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2.9k
views
intron sequences from biomaRt
biomaRt biomaRt
updated 18.4 years ago by ▴ 580 • written 18.4 years ago by ▴ 310
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1
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1.2k
views
Problem using useMart with local DB
biomaRt biomaRt
updated 18.5 years ago by ▴ 580 • written 18.5 years ago by ▴ 100
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9
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2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
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2
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1.4k
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biomaRt, Error: ncol(result) == length(attributes) is not TRUE
Biobase annotate Rgraphviz biomaRt Biobase annotate Rgraphviz biomaRt
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ★ 1.4k
0
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1
reply
759
views
Anopheles annotation using limma2biomaRt: error with fldfilt option
annotate limma biomaRt annotate limma biomaRt
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 510
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1
reply
1.3k
views
Biomart: Does it support IMAGE clone IDs
Microarray Cancer biomaRt Microarray Cancer biomaRt
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ★ 1.9k
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2
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1.9k
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getHomolog in biomaRt
convert biomaRt convert biomaRt
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ▴ 60
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3
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1.5k
views
annotations for Codelink arrays
Annotation GO Cancer r10kcod probe AnnBuilder PROcess biomaRt codelink Annotation GO
updated 18.6 years ago by ▴ 760 • written 18.6 years ago by ★ 1.2k
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3
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views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 2.2k
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10
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2.2k
views
biomaRt manual
affy convert biomaRt affy convert biomaRt
updated 18.7 years ago by ★ 6.5k • written 18.7 years ago by ★ 1.2k
0
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1
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1.3k
views
biomaRt UseMart
biomaRt biomaRt
updated 18.7 years ago by ▴ 580 • written 18.7 years ago by ▴ 50
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4
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2.0k
views
Retrieving Upstream Sequences With biomaRt
biomaRt biomaRt
updated 18.8 years ago by ★ 1.0k • written 18.8 years ago by ▴ 300
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0
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1.2k
views
connect to HapMart with biomaRt
HapMap biomaRt HapMap biomaRt
18.8 years ago Steffen Durinck ▴ 580
0
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1
reply
1.5k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 300
0
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3
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1.7k
views
problem in biomaRt: getBM(output="list")
biomaRt biomaRt
18.9 years ago Georg Otto ▴ 510
0
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1
reply
1.1k
views
AnnBuilder error: parseData can't access some tmp file
AnnBuilder PROcess biomaRt AnnBuilder PROcess biomaRt
updated 18.9 years ago by ▴ 870 • written 18.9 years ago by ▴ 830
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2
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1.1k
views
retrieving chromosome lengths using biomaRt?
biomaRt biomaRt
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 30
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0
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801
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getting gene name from Entrez ID
biomaRt biomaRt
19.1 years ago Francois Pepin ★ 1.3k
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3
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1.8k
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retrieving genomic sequences with biomaRt
Transcription biomaRt Transcription biomaRt
updated 19.1 years ago by ▴ 580 • written 19.1 years ago by ★ 1.9k
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0
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1.4k
views
bioMart 1.6.3 missing mysql=TRUE in useMart
Microarray Annotation GO annotate affy biomaRt genomes Microarray Annotation GO annotate
19.1 years ago mkeehan@lic.co.nz ▴ 10
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3
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2.0k
views
install biomaRt failed - configuration failed for XML and RCurl
biomaRt biomaRt
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ★ 7.4k
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4
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1.1k
views
biomaRt: connection stopping
GO biomaRt GO biomaRt
updated 19.2 years ago by 68k • written 19.2 years ago by ★ 1.9k
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6
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2.2k
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retrieving upstream/intronic sequences using biomaRt
biomaRt biomaRt
updated 19.2 years ago by ▴ 580 • written 19.2 years ago by ▴ 30
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0
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998
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install biomaRt failed - configuration failed for XML and RCurl
biomaRt biomaRt
19.2 years ago zhihua li ▴ 120
0
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1
reply
811
views
biomaRt... possible to specify db version
Cancer biomaRt Cancer biomaRt
updated 19.2 years ago by ▴ 580 • written 19.3 years ago by ▴ 510
0
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1
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1.5k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 19.3 years ago by ▴ 870 • written 19.3 years ago by ▴ 340
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4
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1.6k
views
biomaRt problem
annotate biomaRt annotate biomaRt
updated 19.3 years ago by ▴ 580 • written 19.3 years ago by ▴ 310
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3
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1.7k
views
hypergeometric enrichment of GO terms
Microarray GO GOstats biomaRt Microarray GO GOstats biomaRt
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ▴ 30
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0
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1.4k
views
how to retrieve data in list using getBM in biomaRt package?
Microarray GO Cancer probe Biobase annotate limma biomaRt Microarray GO Cancer probe
19.3 years ago James W. MacDonald 68k
0
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2
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1.6k
views
Display Chromosome-bands in a plot
biomaRt biomaRt
updated 19.4 years ago by ▴ 550 • written 19.4 years ago by ▴ 830
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5
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2.3k
views
biomaRt error in getGene
probe biomaRt probe biomaRt
19.4 years ago Georg Otto ▴ 510
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1
reply
6.4k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 19.4 years ago by ▴ 110 • written 19.4 years ago by ★ 3.4k
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0
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1.1k
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
19.4 years ago Vincent J. Carey, Jr. 6.7k
1,082 results • Page 21 of 22
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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