Showing : Biophysics • reset
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
2.9 years ago simonsF.careers • 0
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
11.1 years ago Yogesh Saletore ▴ 10
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
11.7 years ago Wang Ming ▴ 20
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.7 years ago by ★ 1.2k • written 11.7 years ago by ▴ 20
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.9 years ago Pan Du ▴ 440
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
15.4 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
15.4 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 15.4 years ago by ★ 3.4k • written 15.4 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
15.4 years ago mauede@alice.it ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
15.4 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
15.5 years ago • updated 15.4 years ago mauede@alice.it ▴ 870
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
15.9 years ago elliot harrison ▴ 230
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
15.9 years ago Steve Lianoglou ★ 13k
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Preprocessing affymetrix array data
Biophysics Biophysics
16.2 years ago Abdi Ali ▴ 20
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981
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ★ 13k
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Help with creating a figure
Biophysics Biophysics
updated 16.5 years ago by ▴ 340 • written 16.5 years ago by ★ 13k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.6 years ago Birgit Hauer ▴ 30
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.8 years ago Birgit Hauer ▴ 30
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.8 years ago Birgit Hauer ▴ 30
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1.3k
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.6 years ago by ★ 2.3k • written 21.6 years ago by ▴ 30
21 results • Page 1 of 1
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Comment: lfcShrink and alpha value by cropero • 0
Thank you for your fast answer, I have everything clear now
Answer: DESeq2 - Comparing Comparisons by James W. MacDonald 67k
Assuming that WC in your equation #2 is different in KD1 subunit1_vs_WC and SCR subunit1_vs_WC, this is just an interaction, and the easies…
Comment: Differential Expression Genes as Independent Variables by James W. MacDonald 67k
An alternative to that is to use the `glmnet` package to fit a regularized regression using all proteins at once.
Comment: Differential Expression Genes as Independent Variables by abadgerw • 0
Thanks. The proposal was not to include all proteins as covariates in one model but to iterate with one protein serving as the independent …
Answer: How to annotate a limma Elist raw class object with an annotation file by James W. MacDonald 67k
Your first step when trying to use a function is to read the help page (`?mapIds`), which will bring this up: ``` Usage: colu…
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A: deseq2 filter the low counts
A: deseq2 filter the low counts
scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
Comment: pathview - multiple states
Answer: Crossover design with limma
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