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Biophysics
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Job:
Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
3.9 years ago
simonsF.careers
• 0
0
votes
0
replies
1.5k
views
DEG Calling on Transcripts vs Genes
Biophysics
limma
Biophysics
limma
12.1 years ago
Yogesh Saletore
▴ 10
0
votes
0
replies
1.6k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
12.8 years ago
Wang Ming
▴ 20
0
votes
1
reply
1.7k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
updated 12.8 years ago by
Guangchuang Yu
★ 1.2k • written 12.8 years ago by
Wang Ming
▴ 20
0
votes
0
replies
1.5k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
13.0 years ago
Pan Du
▴ 440
0
votes
0
replies
2.3k
views
R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics
Biophysics
16.4 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.1k
views
R: R: how to use writeFASTA in modality "append"
Biophysics
Biophysics
16.4 years ago
mauede@alice.it
▴ 870
0
votes
6
replies
2.1k
views
R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
PING
miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 16.5 years ago by
michael watson IAH-C
★ 3.4k • written 16.5 years ago by
mauede@alice.it
▴ 870
0
votes
4
replies
1.9k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Biostrings
biomaRt
miRNA
Biophysics
Biostrings
biomaRt
16.5 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.4k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
16.5 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.6k
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
GO
Homo sapiens
Biostrings
biomaRt
miRNA
Biophysics
GO
Homo sapiens
updated 16.5 years ago by
Sean Davis
21k • written 16.5 years ago by
mauede@alice.it
▴ 870
0
votes
3
replies
1.3k
views
R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics
Biophysics
16.5 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
1.4k
views
SAM warning
Biophysics
Alignment
Annotation
Normalization
Cancer
hgu133plus2
probe
affy
vsn
MBCB
vsn
16.9 years ago
elliot harrison
▴ 230
0
votes
0
replies
1.0k
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics
Normalization
affy
vsn
Biophysics
Normalization
affy
vsn
16.9 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
900
views
Preprocessing affymetrix array data
Biophysics
Biophysics
17.2 years ago
Abdi Ali
▴ 20
0
votes
2
replies
1.3k
views
Bizarre artifacts in MA plots for ChIP-chip data
Microarray
Biophysics
Microarray
Biophysics
updated 17.2 years ago by
Henrik Bengtsson
★ 2.4k • written 17.2 years ago by
Steve Lianoglou
★ 13k
0
votes
1
reply
1.1k
views
Help with creating a figure
Biophysics
Biophysics
updated 17.5 years ago by
Artur Veloso
▴ 340 • written 17.5 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
2.2k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
19.6 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.6k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
19.8 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.6k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
19.8 years ago
Birgit Hauer
▴ 30
0
votes
1
reply
1.6k
views
ReadAffy problems
Genetics
Biophysics
affy
Genetics
Biophysics
affy
updated 22.7 years ago by
Laurent Gautier
★ 2.3k • written 22.7 years ago by
Dario Greco
▴ 30
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Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Gordon Smyth
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Istvan Albert
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