Bioconductor BitSeq

Showing : BitSeq • reset

votes

replies

1.3k

views

BitSeq bitseq rnaseq

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sam McInturf ▴ 300

vote

1.1k

views

bitseq paired samples

updated 8.8 years ago by panagiotis.papastamoulis ▴ 30 • written 8.8 years ago by MariaJoseG • 0

votes

replies

3.2k

views

dexseq bitseq cuffdiff Differential exon usage isoforms

9.0 years ago • updated 8.9 years ago elle ▴ 10

votes

955

views

BitSeq

updated 9.1 years ago by Antti Honkela ▴ 50 • written 9.1 years ago by dietmar.pils • 0

vote

replies

1.7k

views

bitseq spliceR

9.1 years ago • updated 9.0 years ago elle ▴ 10

votes

replies

1.5k

views

dexseq bitseq spliceR

9.1 years ago elle ▴ 10

votes

replies

1.3k

views

Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.1 years ago by Maayan Kreitzman ▴ 30 • written 11.1 years ago by Peter Glaus ▴ 70

votes

1.1k

views

Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.2 years ago by Peter Glaus ▴ 70 • written 11.2 years ago by Maayan Kreitzman ▴ 30

votes

replies

1.1k

views

Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

11.3 years ago Peter Glaus ▴ 70

votes

replies

1.0k

views

RNASeq safe BitSeq RNASeq safe BitSeq

11.3 years ago Dave Gerrard ▴ 40

votes

984

views

RNASeq BitSeq RNASeq BitSeq

updated 11.3 years ago by Peter Glaus ▴ 70 • written 11.3 years ago by Dave Gerrard ▴ 40

votes

replies

1.7k

views

BitSeq BitSeq

updated 11.6 years ago by Peter Glaus ▴ 70 • written 11.6 years ago by Fatemehsadat Seyednasrollah ▴ 260

votes

replies

865

views

BitSeq BitSeq

11.6 years ago Fatemehsadat Seyednasrollah ▴ 260

13 results • Page 1 of 1

Recent ...

Replies

Comment: ChAMP not available for bioconductor 3.19 by Macsue • 0

Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be avail…

Comment: ChAMP not available for bioconductor 3.19 by Macsue • 0

> if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by BioinfGuru ▴ 30

I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…

Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Votes

A: Analyzing data without replicates using DiffBind

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

Awards • All

Popular Question to Robert Castelo ★ 3.3k