Bioconductor CATALYST

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431

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visua Visualization CATALYST

12 months ago elefth.pavlos ▴ 40

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858

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CATALYST

updated 16 months ago by SamGG ▴ 360 • written 2.3 years ago by David • 0

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3.0k

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CATALYST

updated 19 months ago by Hervé Pagès 16k • written 19 months ago by Hyoann ▴ 20

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CATALYST

21 months ago Shaun • 0

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1.4k

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CATALYST

2.4 years ago David • 0

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CATALYST SingleCellExperiment

updated 4.0 years ago by helucro ▴ 70 • written 4.0 years ago by achaillon • 0

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1.6k

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CATALYST cytofWorkflow

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by Brent.OCarrigan • 0

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1.2k

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.9 years ago j.krop • 0

8 results • Page 1 of 1

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Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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