Bioconductor CATALYST

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CATALYST

updated 8 weeks ago by SamGG ▴ 300 • written 13 months ago by David • 0

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828

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CATALYST

updated 4 months ago by Hervé Pagès 16k • written 4 months ago by Hyoann ▴ 20

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206

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CATALYST

6 months ago Shaun • 0

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691

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CATALYST

14 months ago David • 0

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803

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CATALYST SingleCellExperiment

updated 2.8 years ago by helucro ▴ 70 • written 2.8 years ago by achaillon • 0

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1.1k

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CATALYST cytofWorkflow

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by Brent.OCarrigan • 0

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756

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CATALYST flowCore assignPrelim Error in vapply read.FCS

4.6 years ago j.krop • 0

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Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

Comment: DeSeq2 design fails (full model matrix is less than full rank) by Basti ▴ 720

As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…

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Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

Steps needed to change design (relevel factors) in DESeq2

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