Bioconductor CATALYST

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366

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visua Visualization CATALYST

10 months ago elefth.pavlos ▴ 40

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796

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CATALYST

updated 14 months ago by SamGG ▴ 350 • written 2.1 years ago by David • 0

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2.8k

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CATALYST

updated 16 months ago by Hervé Pagès 16k • written 16 months ago by Hyoann ▴ 20

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543

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CATALYST

19 months ago Shaun • 0

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1.3k

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CATALYST

2.2 years ago David • 0

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1.2k

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CATALYST SingleCellExperiment

updated 3.8 years ago by helucro ▴ 70 • written 3.8 years ago by achaillon • 0

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1.5k

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CATALYST cytofWorkflow

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by Brent.OCarrigan • 0

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1.2k

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.7 years ago j.krop • 0

8 results • Page 1 of 1

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Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…

Comment: miRTarRnaseq library by María Calvo • 0

Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…

Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

Votes

GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

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