Showing : Cancer • reset
0
votes
0
replies
947
views
pca plot
Cancer Cancer
11.2 years ago Guest User ★ 13k
2
votes
2
replies
2.1k
views
DESeq2: detect significantly increasing across an ordinal variable
RNASeq Cancer DESeq2 RNASeq Cancer DESeq2
updated 11.3 years ago by 43k • written 11.3 years ago by ▴ 100
0
votes
3
replies
997
views
[Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...
Cancer GenomicRanges Cancer GenomicRanges
updated 11.3 years ago by ★ 1.3k • written 11.3 years ago by 16k
0
votes
1
reply
2.1k
views
SomaticSignatures
Annotation Cancer convert Annotation Cancer convert
updated 11.3 years ago by ★ 1.3k • written 11.3 years ago by ▴ 90
0
votes
10
replies
3.5k
views
GenomicAlignments - Speeding up readGAlignmentPairs()
Cancer RNAseqData GenomicFeatures Cancer RNAseqData GenomicFeatures
updated 11.3 years ago by ▴ 320 • written 11.3 years ago by ★ 6.8k
0
votes
0
replies
721
views
Quickly approaching: BioC 2014, Boston, July 31 - Aug 1
Cancer Cancer
11.3 years ago Martin Morgan 25k
0
votes
1
reply
1.6k
views
Thread safety of BSgenome getSeq()
Cancer BSgenome PROcess BSgenome Rsamtools Cancer BSgenome PROcess BSgenome Rsamtools
updated 11.3 years ago by 16k • written 11.3 years ago by ▴ 90
0
votes
0
replies
678
views
Bioconductor newsletter - July 2014
Cancer Cancer
11.3 years ago Valerie Obenchain ★ 6.8k
0
votes
0
replies
1.2k
views
segfault in rqubic
Microarray Cancer rqubic Microarray Cancer rqubic
11.3 years ago Zhang, Jitao David ▴ 120
0
votes
1
reply
1.7k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
11.3 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
953
views
singe_sequences.fa.gz file in Bsgenome.Hsapiens.NCBI.GRCh38 is too big
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
11.3 years ago Hervé Pagès 16k
0
votes
1
reply
1.3k
views
Possible problem with featureCounts() and scipen
Annotation Cancer Breast Rsubread Annotation Cancer Breast Rsubread
updated 11.3 years ago by ★ 3.6k • written 11.3 years ago by ▴ 10
0
votes
1
reply
2.2k
views
Creating DataFrame uses too much memory
Cancer PROcess Cancer PROcess
updated 11.3 years ago by ★ 11k • written 11.3 years ago by ▴ 40
0
votes
0
replies
1.4k
views
crlmm of other software for oncoscan
Cancer crlmm Cancer crlmm
11.3 years ago Richard Friedman ▴ 80
0
votes
3
replies
1.3k
views
DESeq analysis of resistance data
RNASeq Cancer DESeq2 RNASeq Cancer DESeq2
updated 11.3 years ago by 43k • written 11.3 years ago by ★ 13k
0
votes
0
replies
847
views
BioC2014 travel scholarship deadline June 10
Cancer Cancer
11.3 years ago Martin Morgan 25k
0
votes
2
replies
1.2k
views
VCF class: different length when unlisting INFO CompressedCharacterList
Cancer Cancer
updated 11.3 years ago by ★ 11k • written 11.3 years ago by ▴ 50
0
votes
4
replies
1.9k
views
GenomicAlignments and QNAME collision
RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools
updated 11.4 years ago by ▴ 90 • written 11.4 years ago by ★ 6.8k
0
votes
0
replies
1.0k
views
HTqPCR bug in geometric mean normalization
Normalization Cancer Normalization Cancer
11.4 years ago Johannes Rainer ▴ 80
0
votes
0
replies
897
views
Bioc 2014: reduced hotel rates
Cancer Cancer
11.4 years ago Martin Morgan 25k
0
votes
2
replies
2.5k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 11.4 years ago by ▴ 570 • written 11.4 years ago by 16k
0
votes
6
replies
1.3k
views
VCF class: different length when unlisting INFO CompressedCharacterList
Cancer Cancer
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ▴ 50
0
votes
0
replies
1.0k
views
[devteam-bioc] readGAlignmentPairs perfromace issue
RNASeq Cancer RNASeq Cancer
11.4 years ago Hervé Pagès 16k
0
votes
5
replies
1.5k
views
information retrieval from pubmed
Cancer Cancer
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 230
0
votes
2
replies
1.7k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 11.4 years ago by ★ 4.2k • written 11.4 years ago by ▴ 190
0
votes
0
replies
972
views
BioC 2014 Registration Open
Cancer Cancer
11.4 years ago Martin Morgan 25k
0
votes
0
replies
1.7k
views
SomaticSignatures
Cancer BiocParallel Cancer BiocParallel
11.4 years ago Martin Morgan 25k
0
votes
0
replies
2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.5 years ago Elena Serrano ▴ 30
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by 53k
0
votes
1
reply
2.2k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.5 years ago by ▴ 10 • written 11.5 years ago by ▴ 100
0
votes
2
replies
1.4k
views
lumi - limma contrast design
Cancer Cancer
updated 11.5 years ago by ★ 1.1k • written 11.5 years ago by ▴ 350
0
votes
8
replies
2.8k
views
SomaticSignatures
Cancer SomaticSignatures Cancer SomaticSignatures
updated 11.5 years ago by ★ 1.3k • written 11.5 years ago by ★ 8.2k
0
votes
1
reply
2.4k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.5 years ago by ▴ 570 • written 11.5 years ago by ▴ 220
0
votes
2
replies
1.4k
views
RangedData change space information
Cancer TEQC Cancer TEQC
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 240
0
votes
0
replies
1.9k
views
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
11.5 years ago Hervé Pagès 16k
0
votes
5
replies
2.2k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 50
0
votes
1
reply
973
views
justRMA (package Affy) messing up phenoData when passing an AnnotatedDataFrame
Annotation Cancer Annotation Cancer
updated 11.5 years ago by 68k • written 11.5 years ago by ▴ 100
0
votes
1
reply
2.1k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.5 years ago by ▴ 570 • written 11.5 years ago by ▴ 220
0
votes
0
replies
1.8k
views
Job: PhD and postdoc position at DKFZ Heidelberg
Cancer Cancer
11.5 years ago Bernd Fischer ▴ 550
0
votes
2
replies
873
views
Bioconductor newsletter: April 2014
Cancer Cancer
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ★ 6.8k
1
vote
3
replies
2.7k
views
views on Rle using GRanges object
RNASeq Coverage GO Cancer bridge rtracklayer IRanges RNASeq Coverage GO Cancer bridge
updated 11.5 years ago by 16k • written 11.5 years ago by ★ 11k
0
votes
5
replies
1.6k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Cancer Cancer
11.5 years ago Hervé Pagès 16k
0
votes
5
replies
3.8k
views
overlap regions between two GRanges (or GRangesList)
Cancer Cancer
updated 11.6 years ago by ▴ 20 • written 11.6 years ago by 16k
0
votes
0
replies
1.2k
views
Conference Announcement - CAMDA 2014
Genetics Cancer Genetics Cancer
11.6 years ago Djork Clevert ▴ 210
0
votes
0
replies
2.7k
views
WGCNA RNAseq
RNASeq Cancer trigger RNASeq Cancer trigger
11.6 years ago Anna Esteve Codina ▴ 20
0
votes
2
replies
2.1k
views
subsetting SummarizedExperiments - a proposal (or a hack?)
Cancer IRanges GenomicRanges PROMISE Cancer IRanges GenomicRanges PROMISE
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 1.6k
0
votes
1
reply
2.1k
views
edgeR, multifactorial design
RNASeq Cancer edgeR RNASeq Cancer edgeR
updated 11.7 years ago by 53k • written 11.7 years ago by ▴ 70
0
votes
2
replies
1.2k
views
cluster or pattern analysis of expression and CN data of cell lines
Cancer Cancer
updated 11.7 years ago by ★ 4.2k • written 11.7 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Seattle Short Course, Feb 27-28: Introduction to Bioconductor for Sequence Analysis
RNASeq Visualization Cancer RNASeq Visualization Cancer
11.7 years ago Martin Morgan 25k
0
votes
9
replies
2.5k
views
variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
VariantAnnotation Cancer Yeast annotate Biostrings VariantAnnotation VariantAnnotation
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 740
1,555 results • Page 4 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Locations • All
Seattle, WA, United States, 59 minutes ago
United States, 1 hour ago
UK/Cambridge, 1 hour ago
San Diego, 1 hour ago
Denmark, 1 hour ago
Traffic: 768 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6