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Cell calling
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reset
4
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5
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emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 4.5 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
C T
▴ 140
7
votes
12
replies
8.8k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
xingxd16
▴ 20
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Comment: limma correction for tumor purity
by
gabriella.jacobson-eisenberg
▴ 20
Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…
Comment: Best tximport quant.genes.sf
by
ATpoint
★ 4.8k
The tx in the name stands for transcript. Gene level needs no tximport.
Comment: EuroBioC2023 abstract submission is open!
by
arden
• 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis
by
GA
▴ 10
Thank you!
Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
by
sk
• 0
If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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