Bioconductor Cell calling

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.7 years ago by C T ▴ 140

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by xingxd16 ▴ 20

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Comment: limma correction for tumor purity by gabriella.jacobson-eisenberg ▴ 20

Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…

Comment: Best tximport quant.genes.sf by ATpoint ★ 4.8k

The tx in the name stands for transcript. Gene level needs no tximport.

Comment: EuroBioC2023 abstract submission is open! by arden • 0

Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…

Comment: Gene Ontology (GO) Analysis by GA ▴ 10

Thank you!

Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction ( by sk • 0

If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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