Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
simplesinglecell
•
reset
4
votes
5
replies
2.6k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 4.6 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
C T
▴ 140
4
votes
6
replies
1.6k
views
Feature selection across batches in simpleSingleCell when spike-ins are not available.
simpleSingleCell
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Angelos Armen
• 0
1
vote
1
reply
915
views
Feature selection across batches in simpleSingleCell "Correcting batch effects" vignette
simpleSingleCell
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Angelos Armen
• 0
5
votes
1
reply
5.3k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 2.8 years ago by
Stefano Mangiola
▴ 40 • written 5.8 years ago by
shbrief
▴ 20
1
vote
5
replies
2.2k
views
Preprocessing in scran::doubletCells
scran
simpleSingleCell
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Angelos Armen
• 0
4
votes
4
replies
3.4k
views
using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-seq data
limma
edgeR
simplesingleCell
scran
scater
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Bogdan
▴ 670
4
votes
2
replies
2.1k
views
single cell data: adding random effects for subject with multilevel experiment design
SingleCellExperiment
scran
limma
simpleSingleCell
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
Matt Mulé
• 0
1
vote
3
replies
2.0k
views
Troubles with barcodeRanks()
DropletUtils
SingleCellExperiement
DelayedArray
simpleSingleCell
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
Steve Pederson
▴ 170
8
votes
2
replies
3.4k
views
Recommendations for combining multiple 10x runs into one SingleCellExperiment
singlecellexperiment
dropletutils
simplesinglecell
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
Peter Hickey
▴ 750
0
votes
1
reply
1.1k
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows
simplesinglecell
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
es.azadian
• 0
0
votes
1
reply
1.2k
views
The explanation of plotExplanatoryVariables plot
simplesinglecell
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
Xingyu
• 0
1
vote
2
replies
2.2k
views
SingleCellExperiment object cannot be used by Scater package?
scater
singlecellexperiment
simplesinglecell
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
Xingyu
• 0
3
votes
2
replies
4.0k
views
Sparse matrices in Bioconductor objects for single-cell analyses
scater
simpleSingleCell
workflows
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
sandmann.t
▴ 70
13 results • Page
1 of 1
Recent ...
Replies
Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
caroline.zanchi
▴ 10
Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
James W. MacDonald
68k
The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
68k
``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
Awards
• All
Popular Question
to
favorov
• 0
Popular Question
to
bhanu.chandra1
• 0
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
massimo
• 0
Locations
• All
The city by the bay,
3 minutes ago
United States,
22 minutes ago
South Africa,
31 minutes ago
United States,
1 hour ago
WEHI, Melbourne, Australia,
2 hours ago
Traffic: 646 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6