Bioconductor Simplesinglecell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 2.6 years ago by Aaron Lun ★ 28k • written 3.8 years ago by C T ▴ 140

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812

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simpleSingleCell

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Angelos Armen • 0

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462

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simpleSingleCell

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Angelos Armen • 0

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3.6k

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DropletUtils EmptyDrops simpleSingleCell

updated 9 months ago by stefano.mangiola ▴ 10 • written 3.8 years ago by shbrief ▴ 20

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1.2k

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scran simpleSingleCell

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by Angelos Armen • 0

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limma edgeR simplesingleCell scran scater

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by Bogdan ▴ 660

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SingleCellExperiment scran limma simpleSingleCell

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Matt Mulé • 0

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Steve Pederson ▴ 170

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1.7k

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singlecellexperiment dropletutils simplesinglecell

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by Peter Hickey ▴ 650

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624

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workflows simplesinglecell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by es.azadian • 0

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746

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simplesinglecell

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Xingyu • 0

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2.6k

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scater simpleSingleCell workflows

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k

The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…

Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

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Dispersion plot -Interpretation -DESeq2

Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

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