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Cellranger
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How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 3.4 years ago by
Aaron Lun
★ 27k • written 3.4 years ago by
xingxd16
▴ 20
0
votes
1
reply
228
views
Aberrant number of cells
CellBarcode
DropletUtils
emptyDrops()
Cellranger
scRNAseq
updated 3 months ago by
rohitsatyam102
▴ 20 • written 6 months ago by
gregoire.destreel
• 0
0
votes
0
replies
174
views
Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR
Cellranger
GEX+Features+VDJ
6 months ago
gregoire.destreel
• 0
3 results • Page
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Answer: paired samples, comparing expression given a continuous variable
by
Gordon Smyth
46k
You including too many terms in the linear model. TimePoint and Total.Score give almost the same information. You can include either one of…
Comment: I cannot install "microbiome"
by
Marcel Ramos
570
Hi @61191329 , Unfortunately, I am unable to reproduce the issue on Windows. Please provide additional information, namely `BiocManager::v…
Comment: DESeq2 LFC changes sign after adjusting for surrogates
by
Marie
• 0
Thanks a lot!
Comment: how to use Rsamtools to parse extra fields from STAR alignment
by
Jiping Wang
▴ 90
Thanks so much! That's exactly the solution I am looking for.
Comment: Mapping genome regions to gene symbols
by
michaelwegert
• 0
function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…
Votes
A: log2FoldChange calculation in DESeq2 output
A: DESeq2 baseMean counts
Answer: error running UniProt.ws
error running UniProt.ws
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
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