Bioconductor ChAMP

Showing : ChAMP • reset

1

vote

4

replies

207

views

ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 9 days ago by James W. MacDonald 65k • written 13 days ago by Mirella Aurora • 0

1

vote

2

replies

145

views

ChAMP

14 days ago • updated 13 days ago Sherin • 0

2

votes

6

replies

1.4k

views

ChAMP DMRcate minfi

updated 28 days ago by Tim Peters ▴ 170 • written 5 months ago by rae.alshammari ▴ 10

1

vote

7

replies

1.8k

views

ChAMP EPICv2

updated 14 days ago by shilpa • 0 • written 10 months ago by medha.suman • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Votes

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Awards • All

Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190