Showing : ChAMP • reset
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minfi v1.14 through champ: read.450k error with file path name
minfi champ illumina 450k
10.3 years ago jeroen • 0
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1.7k
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Error in champ.lasso of ChAMP Bioconductor package for Methylation 450k analysis
ChAMP
10.4 years ago junyupub • 0
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1.4k
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ChAMP bailing before analysis complete
champ
11.0 years ago schasse • 0
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3
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8.6k
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Downgrading R to an older version
MEDIPS ChAMP MEDIPS ChAMP
updated 11.4 years ago by ★ 8.2k • written 11.3 years ago by ▴ 70
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minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.6 years ago swarmqq@gmail.com ▴ 10
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minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 11.9 years ago by ▴ 20 • written 11.9 years ago by ★ 4.2k
156 results • Page 4 of 4
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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