Bioconductor ChIP-Seq

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next-generation sequencing rna-seq chip-seq single cell Job

9.5 years ago Katja Hebestreit ▴ 130

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2.3k

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diffbind chip-seq

updated 9.7 years ago by AB ▴ 110 • written 10.8 years ago by medinaale • 0

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diffbind chip-seq bam

10.0 years ago eli7javasky • 0

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chipseq chipqc chip-seq

10.2 years ago lindahove ▴ 10

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Course RNA-Seq Chip-seq Parallel News

10.7 years ago Martin Morgan 25k

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csaw chip-seq clip-seq

10.7 years ago IV ▴ 30

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1.6k

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DiffBind ChIP-Seq

updated 10.9 years ago by Rory Stark ★ 5.2k • written 10.9 years ago by Georg Otto ▴ 120

57 results • Page 2 of 2

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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