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ChIPpeakAnno
•
reset
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO
annotate
ChIPpeakAnno
GO
annotate
ChIPpeakAnno
14.7 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
947
views
ChIPpeak Anno RangedData question
GO
ChIPpeakAnno
GO
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.5k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation
annotate
ChIPpeakAnno
Annotation
annotate
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
866
views
Gene Name annotation
Annotation
annotate
convert
ChIPpeakAnno
Annotation
annotate
convert
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.0k
views
ChIPpeakAnno question
ChIPpeakAnno
ChIPpeakAnno
updated 14.8 years ago by
Ron Hart
▴ 20 • written 14.8 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
875
views
Regarding to ChIPpeakAnno package
IRanges
ChIPpeakAnno
IRanges
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
2.3k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
updated 14.8 years ago by
Julie Zhu
★ 4.3k • written 14.8 years ago by
Eric Cabot
▴ 40
0
votes
0
replies
1.0k
views
Regarding to ChIPpeakAnno package
ChIPpeakAnno
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
832
views
A question about outputting GO annotation
Annotation
GO
ChIPpeakAnno
Annotation
GO
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
totalTest number in ChipPeakAnno
ChIPpeakAnno
ChIPpeakAnno
updated 14.9 years ago by
Binbin Liu
▴ 30 • written 14.9 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
943
views
ChIPpeakAnno
ChIPpeakAnno
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO
annotate
rtracklayer
ChIPpeakAnno
GO
annotate
rtracklayer
ChIPpeakAnno
updated 15.0 years ago by
Michael Lawrence
★ 11k • written 15.0 years ago by
oleg@stat.berkeley.edu
▴ 20
0
votes
0
replies
1.2k
views
ChIPpeakAnno bug?
GO
AnnotationData
ChIPpeakAnno
GO
AnnotationData
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.2k
views
Error while ChIPpeakAnno installation
limma
biomaRt
IRanges
ChIPpeakAnno
limma
biomaRt
IRanges
ChIPpeakAnno
updated 15.0 years ago by
Julie Zhu
★ 4.3k • written 15.0 years ago by
Prashantha Hebbar
▴ 260
0
votes
0
replies
1.2k
views
ChIPpeakAnno -findOverlappingPeaks
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.7k
views
about ChIPpeakAnno
Annotation
ChIPpeakAnno
Annotation
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.2 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
updated 15.2 years ago by
Julie Zhu
★ 4.3k • written 15.2 years ago by
Noah Dowell
▴ 410
0
votes
6
replies
2.1k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.4 years ago by
Julie Zhu
★ 4.3k • written 15.4 years ago by
Noah Dowell
▴ 410
0
votes
8
replies
2.1k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation
Cancer
ChIPpeakAnno
Annotation
Cancer
ChIPpeakAnno
updated 15.4 years ago by
Dario Strbenac
★ 1.6k • written 15.4 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
956
views
ChIPpeakAnno BED2RangedData
ChIPpeakAnno
ChIPpeakAnno
updated 15.5 years ago by
Julie Zhu
★ 4.3k • written 15.5 years ago by
Abirami Subbu
▴ 10
0
votes
0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings
ChIPpeakAnno
Biostrings
ChIPpeakAnno
15.6 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.1k
views
ChIPpeakAnno get sequences from ranged data
ChIPpeakAnno
ChIPpeakAnno
15.6 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
1.9k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
updated 15.6 years ago by
Ivan Gregoretti
▴ 310 • written 15.6 years ago by
Julie Zhu
★ 4.3k
0
votes
3
replies
1.4k
views
ChIPpeakAnno
Transcription
ChIPpeakAnno
Transcription
ChIPpeakAnno
15.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
932
views
[Bioc-devel] BSgenome error
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
15.9 years ago
Tony Chiang
▴ 570
0
votes
0
replies
1.3k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
15.9 years ago
Khademul Islam
▴ 30
0
votes
1
reply
1.8k
views
ChIPpeakAnno Biomart annotation
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
updated 15.9 years ago by
Julie Zhu
★ 4.3k • written 15.9 years ago by
Khademul Islam
▴ 30
179 results • Page
4 of 4
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
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dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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