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ChemmineR
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
2.1 years ago
Sean
• 0
0
votes
1
reply
1.2k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
4.1 years ago
adelenelai
• 0
0
votes
0
replies
1.9k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
4.3 years ago
sukissqz
• 0
3
votes
4
replies
1.8k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 4.6 years ago by
Thomas Girke
★ 1.7k • written 4.7 years ago by
teresadijor
• 0
2
votes
6
replies
1.7k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 6.4 years ago by
khoran
▴ 10 • written 6.5 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.3k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 6.5 years ago by
Thomas Girke
★ 1.7k • written 6.5 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.2k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
6.5 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.8k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 7.5 years ago by
Joris.Meys
• 0
0
votes
0
replies
1.1k
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
7.9 years ago
jubilantsundar
• 0
1
vote
2
replies
2.0k
views
drawing chemical from smile 2D/3D
chemminer
updated 8.2 years ago by
Thomas Girke
★ 1.7k • written 8.2 years ago by
Stane
▴ 40
0
votes
0
replies
1.2k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
8.5 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.9k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
8.5 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.4k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 9.4 years ago by
Thomas Girke
★ 1.7k • written 9.4 years ago by
ረ
• 0
0
votes
0
replies
1.4k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
12.5 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.5k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
12.8 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
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Replies
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design
by
James W. MacDonald
68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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