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ChemmineR
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621
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
2.4 years ago
Sean
• 0
0
votes
1
reply
1.4k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
4.5 years ago
adelenelai
• 0
0
votes
0
replies
2.0k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
4.7 years ago
sukissqz
• 0
3
votes
4
replies
1.9k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 5.0 years ago by
Thomas Girke
★ 1.7k • written 5.1 years ago by
teresadijor
• 0
2
votes
6
replies
1.9k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 6.8 years ago by
khoran
▴ 10 • written 6.9 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.4k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 6.9 years ago by
Thomas Girke
★ 1.7k • written 6.9 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.3k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
6.9 years ago
Anthony Nash
▴ 20
1
vote
4
replies
3.0k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 7.9 years ago by
Joris.Meys
• 0
0
votes
0
replies
1.2k
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
8.3 years ago
jubilantsundar
• 0
1
vote
2
replies
2.3k
views
drawing chemical from smile 2D/3D
chemminer
updated 8.6 years ago by
Thomas Girke
★ 1.7k • written 8.6 years ago by
Stane
▴ 40
0
votes
0
replies
1.3k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
8.9 years ago
stephan.struckmann
• 0
0
votes
2
replies
2.1k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
8.9 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.5k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 9.7 years ago by
Thomas Girke
★ 1.7k • written 9.7 years ago by
ረ
• 0
0
votes
0
replies
1.5k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
12.9 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.6k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
13.1 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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