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ChemmineR
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426
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
15 months ago
Sean
• 0
0
votes
1
reply
1.0k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
3.3 years ago
adelenelai
• 0
0
votes
0
replies
1.6k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
3.5 years ago
sukissqz
• 0
3
votes
4
replies
1.5k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 3.8 years ago by
Thomas Girke
★ 1.7k • written 3.9 years ago by
teresadijor
• 0
2
votes
6
replies
1.3k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 5.6 years ago by
khoran
▴ 10 • written 5.7 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.1k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 5.7 years ago by
Thomas Girke
★ 1.7k • written 5.7 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.0k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.7 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.4k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.7 years ago by
Joris.Meys
• 0
0
votes
0
replies
978
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
7.1 years ago
jubilantsundar
• 0
1
vote
2
replies
1.7k
views
drawing chemical from smile 2D/3D
chemminer
updated 7.4 years ago by
Thomas Girke
★ 1.7k • written 7.4 years ago by
Stane
▴ 40
0
votes
0
replies
1.1k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
7.6 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.6k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
7.7 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.2k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 8.5 years ago by
Thomas Girke
★ 1.7k • written 8.5 years ago by
ረ
• 0
0
votes
0
replies
1.3k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
11.6 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.3k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
11.9 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
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Comment: DESeq Input from Salmon + tximport/tximeta
by
ATpoint
★ 4.5k
> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Gordon Smyth
51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…
Comment: DESeq Input from Salmon + tximport/tximeta
by
LuciaNhu
• 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Answer: DESeq Input from Salmon + tximport/tximeta
by
Michael Love
42k
Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…
Votes
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
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