Bioconductor Chemminer

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Cheminformatics ChemmineR ChemmineDrugs

2.5 years ago Sean • 0

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cheminf ChemmineOB Cheminformatics ChemmineR

4.5 years ago adelenelai • 0

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ChemmineR Chemmin ChemmineOB

4.8 years ago sukissqz • 0

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ChemmineR ChemmineOB

updated 5.0 years ago by Thomas Girke ★ 1.7k • written 5.2 years ago by teresadijor • 0

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ChemmineR Chemistry

updated 6.9 years ago by khoran ▴ 10 • written 7.0 years ago by Anthony Nash ▴ 20

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bioassayR ChemmineR PubChem

updated 6.9 years ago by Thomas Girke ★ 1.7k • written 6.9 years ago by Anthony Nash ▴ 20

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bioassayr chemmineR cheminformatics

7.0 years ago Anthony Nash ▴ 20

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keggrest chemminer fmcsr graph

written 7.9 years ago by Joris.Meys • 0

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chemminer

8.3 years ago jubilantsundar • 0

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chemminer

updated 8.7 years ago by Thomas Girke ★ 1.7k • written 8.7 years ago by Stane ▴ 40

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ChemmineR

8.9 years ago stephan.struckmann • 0

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ChemmineR ChemmineOB ChemmineTools Drug

9.0 years ago elisa.micarelli ▴ 10

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ChemmineR

updated 9.8 years ago by Thomas Girke ★ 1.7k • written 9.8 years ago by ረ • 0

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Network Clustering PROcess ChemmineR Network Clustering PROcess ChemmineR

12.9 years ago Thomas Girke ★ 1.7k

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Clustering ChemmineR Clustering ChemmineR

13.2 years ago Thomas Girke ★ 1.7k

15 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Subsetting data verses contrasts [DESeq2]?

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Popular Question to Peter Hickey ▴ 760