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Chromatin
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1
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1.4k
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extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
gryderart
• 0
0
votes
0
replies
1.2k
views
Job:
Postdoctoral position - Molecular Biologist
epigenomics
RNA methylation
RNA dynamics
chromatin
computational biology
Job
6.5 years ago
mattia pelizzola
▴ 200
1
vote
4
replies
2.0k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.6 years ago by
Gord Brown
▴ 670 • written 6.6 years ago by
tgjohnst
• 0
5
votes
7
replies
4.6k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
7.3 years ago • updated 7.2 years ago
BioinfGuru
▴ 30
0
votes
0
replies
1.8k
views
Job:
Harvard Medical School: Postdoctoral Research Associate position
Genomic Assays
Chromatin
Computational Biology
Job
9.6 years ago
Doe, Aimee
▴ 40
5 results • Page
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Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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