Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hic
•
reset
0
votes
0
replies
628
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
17 months ago
xubeisi
• 0
0
votes
0
replies
654
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.0 years ago
Ankit
▴ 20
0
votes
3
replies
707
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 19 months ago by
merve.sahn
• 0 • written 3.1 years ago by
mtS
• 0
0
votes
0
replies
427
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.1 years ago
changxu.fan
▴ 20
1
vote
7
replies
1.4k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.3 years ago by
Aaron Lun
★ 28k • written 3.3 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
683
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
girardot
• 0
0
votes
1
reply
684
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.2 years ago by
Kevin Blighe
3.9k • written 4.2 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.4k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 4.9 years ago by
bioparticles.melly
• 0 • written 4.9 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.2k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
mictadlo
▴ 10
0
votes
1
reply
770
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.0 years ago
mictadlo
▴ 10
1
vote
1
reply
1.1k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
gryderart
• 0
2
votes
1
reply
1.0k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
hwick1
▴ 20
0
votes
8
replies
1.3k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
hwick1
▴ 20
2
votes
2
replies
1.3k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.3 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.5k
views
GOTHiC hg19 error
GOTHiC
hic
8.2 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.1k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.2 years ago
Bogdan
▴ 670
16 results • Page
1 of 1
Recent ...
Replies
Comment: Result from GSEA for non-model organism not as expected
by
James W. MacDonald
64k
I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
by
James W. MacDonald
64k
This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…
Comment: Subtracting INPUT reads from ChIP read counts.
by
ann-sophie.gironne
• 0
Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…
Comment: Ensembl down???
by
James W. MacDonald
64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected
by
Aastha Kapoor
• 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
Awards
• All
Scholar
to
Mike Smith
★ 6.2k
Scholar
to
Hervé Pagès
16k
Popular Question
to
bas_work
▴ 20
Popular Question
to
James W. MacDonald
64k
Popular Question
to
A
▴ 40
Locations
• All
Germany,
just now
Canada,
5 minutes ago
United States,
5 minutes ago
United States,
7 minutes ago
United Kingdom,
12 minutes ago
Traffic: 867 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6