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ComBat_seq
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Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
14 months ago
Travis
• 0
5
votes
2
replies
2.8k
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
2.2 years ago
Federico
▴ 10
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.1 years ago • updated 3.9 years ago
zeegzaag
• 0
3 results • Page
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Answer: Results with PON give more variants
by
Kevin Blighe
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Your observation aligns with the expected behavior of Mutect2 in tumor-only mode, where the panel of normals (PON) integrates into the vari…
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Kevin Blighe
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The empty rectangles that you observe in the treemap plot generated by the `rrvgo` package occur because the underlying `treemap` package d…
Answer: CRISPRSeek Question: changing weight and gRNA.size causes error
by
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The error you encounter when setting `gRNA.size = 24` occurs because the default `weights` vector has a length of 20, which mismatches the …
Answer: Feedback needed on new user-friendly BED file tool
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Unsure, James, let me try to answer I use BED files frequently in my bioinformatics work, primarily through command-line tools like BEDT…
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The output you observe from the SigDF object is normal and corresponds to the methylated and unmethylated intensities, separated by color c…
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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