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Controls
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reset
0
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5
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Running DESeq2 on viral infection without control/host data
DESeq2
viral
controls
2.1 years ago
f99942
• 0
0
votes
8
replies
2.4k
views
Two controls in RNAseq formula for DESeq2
deseq2
formula
controls
design
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
taveluz
• 0
1
vote
2
replies
5.1k
views
DESeq2 estimateSizeFactors with control genes
deseq2
differential gene expression
controls
references
updated 6.0 years ago by
mahesh
▴ 10 • written 6.0 years ago by
cris.kgs
• 0
0
votes
2
replies
1.1k
views
How can I define which samples are controls and which samples are cases in ChAMP
ChAMP
champ.DMP
Cases
Controls
references
6.1 years ago
yuabrahamliu
• 0
4 results • Page
1 of 1
Recent ...
Replies
Comment: [How to construct a model.matrix ]
by
kyj2226
• 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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Robert Castelo
★ 3.4k
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Michael Stadler
▴ 350
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ATpoint
★ 4.5k
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James W. MacDonald
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