Bioconductor CopyNumberVariation

Showing : CopyNumberVariation • reset

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318

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conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 10 weeks ago by James W. MacDonald 68k • written 10 weeks ago by luca.mangherini • 0

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763

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CopyNumberPlots HMMcopy CopyNumberVariation

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by SSSJec • 0

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275

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conumee CopyNumberVariation MethylationArrayData

11 weeks ago Adam • 0

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1.3k

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CopyNumberVariation CopyNumberPlots

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by shweta • 0

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1.1k

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CopyNumberVariation CNVRanger GenomicRanges

3.3 years ago svlachavas ▴ 840

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1.1k

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CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData

3.7 years ago FWNL15 • 0

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851

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QDNAseq blacklist CopyNumberVariation blocklist

3.5 years ago briverog • 0

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Scholar to James W. MacDonald 68k