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CytoML
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FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 5 weeks ago by
SamGG
▴ 350 • written 10 weeks ago by
jarod
▴ 30
0
votes
0
replies
509
views
CytoML: gatingset_to_flowjo() "Could not find files for the given pattern(s)" error
CytoML
21 months ago
nmchavez
• 0
0
votes
0
replies
544
views
flowjo_to_gatingset() subset samples issue
CytoML
2.0 years ago
stephenfchristy
• 0
0
votes
0
replies
876
views
[CytoML/ggcyto] y-axis density plot: low cell count numbers
CytoML
ggcyto
cytoml
2.1 years ago
FL
• 0
0
votes
0
replies
659
views
flowjo_to_gatingset function error
CytoML
3.3 years ago
Iman
• 0
0
votes
2
replies
966
views
Add ticks to scale_x_flowjo_biexp()?
R
CytoML
ggycto
updated 3.4 years ago by
Jiang, Mike
★ 1.3k • written 3.4 years ago by
Marissa
• 0
0
votes
2
replies
799
views
cytobank_to_gatingset path too long Error
CytoML
cytobank_to_gatingset
3.7 years ago
km_sch2002
• 0
7 results • Page
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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