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Showing :
flowWorkspace
•
reset
0
votes
2
replies
141
views
arm64 Update to flowWorkspace (4.14.2)
flowWorkspace
19 days ago • updated 18 days ago
rgong1
• 0
1
vote
0
replies
153
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
4 weeks ago
jarod
▴ 30
0
votes
0
replies
741
views
Job:
Post-Doctoral Bioinformatics Research Scientist / Bioinformatician II
flowWorkspace
CytoGLMM
FlowSOM
2.3 years ago
hbolouri
• 0
0
votes
1
reply
752
views
Getting a dataset that only contains the flow data within the gated area
flowWorkspace
updated 2.5 years ago by
Jiang, Mike
★ 1.3k • written 2.5 years ago by
henry
• 0
0
votes
1
reply
1.4k
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 2.5 years ago by
Jiang, Mike
★ 1.3k • written 2.9 years ago by
Khai-Chuong
• 0
5
votes
4
replies
1.4k
views
ggcyto wrong axis scale?
ggcyto
flowWorkspace
flow cytometry
flowjo
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
andrej.stoll.de
▴ 10
4
votes
5
replies
1.0k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 3.9 years ago by
Jake Wagner
▴ 310 • written 4.0 years ago by
stefankolling+github
• 0
1
vote
1
reply
2.0k
views
uploading xml file in flowworkspace
flowworkspace
xml
R
flowjo
updated 4.3 years ago by
Abby Moore
• 0 • written 7.0 years ago by
Ekaterina Terskikh
▴ 10
1
vote
3
replies
1.0k
views
Problem parsing data with parseWorkspace
flowWorkspace
4.5 years ago
jokup101
• 0
3
votes
2
replies
984
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
4.6 years ago
Brent.OCarrigan
• 0
1
vote
3
replies
1.1k
views
Cannot inverse transform GatingSet
flowworkspace
flow cytometry
flow workspace
updated 4.8 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
mfahlber
• 0
0
votes
1
reply
833
views
How to get popStats from wsp
flowworkspace
updated 5.3 years ago by
Jiang, Mike
★ 1.3k • written 5.3 years ago by
vonskopnik
▴ 10
2
votes
3
replies
1.4k
views
FlowJo workspace cannot be parsed with flowworkspace
flowworkspace
parseWorkspace
parseWorkspace
updated 5.5 years ago by
Jiang, Mike
★ 1.3k • written 5.5 years ago by
vonskopnik
▴ 10
0
votes
4
replies
1.8k
views
Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo_biexp'. How do I get untransformed values?
flowworkspace
updated 5.8 years ago by
Jiang, Mike
★ 1.3k • written 5.8 years ago by
mark.brown
• 0
1
vote
3
replies
1.5k
views
Unable to install flowWorkspace from github
flowWorkspace
cytoutils
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
anders.tondell
▴ 30
2
votes
5
replies
1.8k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 6.6 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
justinyi10
▴ 10
0
votes
1
reply
701
views
How to adjust plotGate axis?
flowworkspace
6.7 years ago
justinyi10
▴ 10
0
votes
5
replies
1.4k
views
getIndices identifies non existing cells in a gate
flowworkspace
getIndices
updated 7.1 years ago by
Jiang, Mike
★ 1.3k • written 7.1 years ago by
helena_t
• 0
2
votes
5
replies
2.0k
views
Workflow highthroughputassays can't install properly
workflows
flowcore
flowstats
flowworkspace
7.1 years ago
kristoffer.haurum
• 0
3
votes
0
replies
1.7k
views
An appeal to flow cytometry tools users
flow
flowcore
flowworkspace
cytometry
gating
7.1 years ago
Greg Finak
▴ 240
0
votes
1
reply
999
views
exporting bi-exponetially transformed data as CVS
flowWorkspace
flowcore
updated 7.2 years ago by
Jiang, Mike
★ 1.3k • written 7.2 years ago by
Aki Hoji
▴ 10
2
votes
4
replies
1.3k
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
Rivka
• 0
0
votes
1
reply
2.1k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 7.9 years ago by
Jiang, Mike
★ 1.3k • written 7.9 years ago by
anara92
• 0
0
votes
2
replies
2.4k
views
OpenCyto -- proper gating of CD45
opencyto gating
flowworkspace
updated 7.9 years ago by
Jiang, Mike
★ 1.3k • written 7.9 years ago by
Ulrik Stervbo
▴ 30
0
votes
2
replies
1.2k
views
on extend_val parameter in parseWorkspace
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
lovetatting
▴ 10
2
votes
1
reply
1.6k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 8.0 years ago by
lovetatting
▴ 10 • written 8.0 years ago by
wir.traumen
▴ 10
0
votes
1
reply
1.8k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.0 years ago
Jiang, Mike
★ 1.3k
1
vote
9
replies
3.1k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.2 years ago
anders.tondell
▴ 30
1
vote
6
replies
1.7k
views
flowWorkspace: Crash when using getPopStats with format="wide"
flowworkspace
8.2 years ago
Viktor Thiel
• 0
0
votes
2
replies
1.3k
views
Exporting to FlowJo
flowworkspace
8.3 years ago
hunjoong.lee
• 0
1
vote
2
replies
1.2k
views
flowWorkspace doesn't allow channels that are named as subset (edit: substring) of other (PE-A and PE-Alexa Fluor 700-A eg.)
flowWorkspace
updated 8.3 years ago by
Jiang, Mike
★ 1.3k • written 8.3 years ago by
lovetatting
▴ 10
1
vote
1
reply
1.4k
views
Understanding Flow cytometry data
flow cytometry
flowcore
flowclean
rflowcyt
flowworkspace
updated 8.3 years ago by
Jiang, Mike
★ 1.3k • written 8.3 years ago by
magomudw
• 0
2
votes
2
replies
1.4k
views
Problem updating flowWorkspace -- error: unrecognized command line option "-ftemplate-depth=900"
flowWorkspace
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
sebastian.luna.valero
• 0
0
votes
3
replies
1.2k
views
Displaying Negative data from flow cytometers
flowcore
flowworkspace
flowviz
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
arnaud.colantonio
• 0
0
votes
0
replies
1.4k
views
flowWorkspace and ggcyto
flowworkspace
flow cytometry
visualization
8.6 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.4k
views
On boolean combinations (flowWorkspace)
flowworkspace
flow cytometry
8.8 years ago
Jiang, Mike
★ 1.3k
2
votes
5
replies
1.5k
views
Memory problem using openWorkspace()
flowworkspace
9.4 years ago
Silke Zachariae
▴ 30
0
votes
1
reply
1.3k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess
flowWorkspace
PROcess
flowWorkspace
updated 11.9 years ago by
Nikolas
▴ 30 • written 11.9 years ago by
Greg Finak
▴ 240
0
votes
0
replies
1.3k
views
flowWorkspace transformation on FCS 3 data
PROcess
flowWorkspace
PROcess
flowWorkspace
11.9 years ago
Nikolas
▴ 30
39 results • Page
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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