Bioconductor DESEq2

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199

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RNA-seq DESeq2

updated 4 days ago by ATpoint ★ 4.1k • written 6 days ago by Reza • 0

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254

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DESeq2

updated 1 day ago by ATpoint ★ 4.1k • written 8 days ago by angelathuynh5 • 0

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136

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DESeq2

updated 4 days ago by Michael Love 42k • written 6 days ago by Zainab ▴ 10

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DESeq2 rnaseqGene Normalization

updated 12 hours ago by ATpoint ★ 4.1k • written 13 hours ago by sajadahmad41454 • 0

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159

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DESeq2

7 days ago • updated 6 days ago kcarey • 0

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113

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

1 day ago • updated 11 hours ago sajadahmad41454 • 0

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139

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

9 days ago • updated 6 days ago Aurora • 0

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239

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DESeq2 design coldata

updated 5 days ago by swbarnes2 ★ 1.3k • written 7 days ago by arfranco ▴ 130

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

That ll be helpful. Thank you.

Comment: Log-cpm values from limma by Shaimaa Gamal • 0

I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…

Comment: DSS CpG coverage threshold by j.gilbert • 0

Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Segmentation is of the whole genome, I'll write some code for doing this later today.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …

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Bioconductor 3.19 is Released!

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

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