Bioconductor DESe

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DESeq2 Dese

updated 11 weeks ago by Michael Love 42k • written 12 weeks ago by Léa • 0

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294

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DESeq2 dese

updated 4 months ago by ATpoint ★ 4.2k • written 4 months ago by Xu • 0

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327

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dese DESeq2

4 months ago pl23 • 0

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dese DESeq2

6 months ago Hugo • 0

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DESe DESeq2

10 months ago Adèle • 0

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1.1k

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Dese DESeq2

12 months ago Asger Mølgaard • 0

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DESeq2 lfcshrink DESe

updated 13 months ago by Michael Love 42k • written 13 months ago by Alina • 0

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DESeq2 Dese DifferentialRegulation differe

updated 6 days ago by ij283 • 0 • written 14 months ago by Bernardo ▴ 10

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951

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dese DESeq2

updated 2.1 years ago by James W. MacDonald 66k • written 2.1 years ago by lmrogers34 ▴ 10

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3.5k

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DESE DESeq2

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by Maryam.sed1400 • 0

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DESeq2 dese

2.4 years ago aedavids ▴ 20

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883

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DESeq2 dese

2.6 years ago wilfried.guiblet • 0

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656

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DESe DESeq2

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by Dinesh • 0

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1.0k

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DESeq2 DESe

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by glennli • 0

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798

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DESeq2

updated 3.5 years ago by Michael Love 42k • written 3.6 years ago by hpapoli • 0

15 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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