Bioconductor DESe

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RUVSeq DESeq2 dese

17 months ago BioinfGuru ▴ 70

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DESeq2 Dese

updated 22 months ago by Michael Love 43k • written 22 months ago by Léa • 0

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DESeq2 dese

written 23 months ago by Xu • 0

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dese DESeq2

24 months ago pl23 • 0

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dese DESeq2

2.1 years ago Hugo • 0

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DESe DESeq2

2.5 years ago Adèle • 0

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Dese DESeq2

2.6 years ago Asger Mølgaard • 0

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DESeq2 lfcshrink DESe

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by Alina • 0

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DESeq2 Dese DifferentialRegulation differe

updated 19 months ago by ij283 • 0 • written 2.8 years ago by Bernardo ▴ 10

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dese DESeq2

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by lmrogers34 ▴ 10

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DESE DESeq2

updated 3.7 years ago by Basti ▴ 780 • written 3.7 years ago by Maryam.sed1400 • 0

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DESeq2 dese

4.0 years ago aedavids ▴ 20

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1.3k

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DESeq2 dese

4.2 years ago wilfried.guiblet • 0

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979

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DESe DESeq2

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by Dinesh • 0

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DESeq2 DESe

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by glennli • 0

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DESeq2

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by hpapoli • 0

16 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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