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DESe
•
reset
2
votes
2
replies
475
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
3 months ago
BioinfGuru
▴ 70
0
votes
1
reply
340
views
collapseReplicates dimension error
DESeq2
Dese
updated 8 months ago by
Michael Love
43k • written 8 months ago by
Léa
• 0
0
votes
3
replies
494
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 9 months ago by
Xu
• 0
0
votes
2
replies
520
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
10 months ago • updated 9 months ago
pl23
• 0
0
votes
2
replies
764
views
Linear Model Fitting and Colinearity
dese
DESeq2
11 months ago
Hugo
• 0
0
votes
5
replies
1.1k
views
DESeq2 analysis
DESe
DESeq2
16 months ago
Adèle
• 0
0
votes
2
replies
1.5k
views
Handling NA's in Deseq2
Dese
DESeq2
18 months ago • updated 17 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.4k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 18 months ago by
Michael Love
43k • written 18 months ago by
Alina
• 0
4
votes
5
replies
1.6k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 5 months ago by
ij283
• 0 • written 19 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.1k
views
Merging two plated in R
dese
DESeq2
updated 2.5 years ago by
James W. MacDonald
67k • written 2.5 years ago by
lmrogers34
▴ 10
0
votes
5
replies
3.9k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.5 years ago by
Basti
▴ 780 • written 2.5 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
2.8 years ago
aedavids
▴ 20
0
votes
2
replies
1.0k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.1 years ago
wilfried.guiblet
• 0
0
votes
2
replies
766
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
glennli
• 0
0
votes
2
replies
986
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
hpapoli
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Struggle with the replicates of epic array data
by
Melisa Tecik
• 0
Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …
Answer: bioconductor packages on bioconda
by
James W. MacDonald
67k
The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.
Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
by
James W. MacDonald
67k
The default for `plotKaryotype` is to use hg19.
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment
by
Stefano Mangiola
▴ 20
saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.
Comment: Create Illmina bead summary data
by
Liu
• 0
Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …
Votes
Answer: Struggle with the replicates of epic array data
Answer: bioconductor packages on bioconda
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
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