Bioconductor DESeq2

Showing : DESeq2 • reset

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DESeq2

updated 3 hours ago by SamGG ▴ 350 • written 4 hours ago by YouCook • 0

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DESeq2 rnaseqGene

updated 2 hours ago by Ram ▴ 210 • written 6 hours ago by Sudip • 0

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DESeq2

updated 1 day ago by James W. MacDonald 66k • written 2 days ago by boczniak767 ▴ 720

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171

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DESeq2

updated 6 hours ago by Michael Love 42k • written 2 days ago by ennui • 0

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130

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Seurat DESeq2 single-cell scRNA Pseudobulk

updated 3 days ago by Guido Hooiveld ★ 4.0k • written 4 days ago by Sara • 0

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153

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DESeq2 GSVA ssGSEA

updated 3 days ago by Robert Castelo ★ 3.3k • written 6 days ago by michelafrancesconi8 • 0

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124

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DESeq2 clinicaltraits Normalization batchnormalisation

6 days ago • updated 3 days ago sukeshinik5 • 0

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261

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DESeq2

updated 4 days ago by ATpoint ★ 4.2k • written 6 days ago by tjl • 0

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805

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 18 months ago by James • 0

9 results • Page 1 of 1

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Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

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Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

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