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pcaExplorer
•
reset
5
votes
6
replies
254
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
5 weeks ago
Alan
• 0
4
votes
7
replies
419
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic
org.Sc.sgd.db
pcaExplorer
topGO
EnrichmentBrowser
updated 3 months ago by
Federico Marini
▴ 140 • written 3 months ago by
chase.mateusiak
• 0
5
votes
6
replies
10k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2
pcaExplorer
updated 14 months ago by
Michael Love
37k • written 14 months ago by
vanbelj
▴ 10
2
votes
4
replies
630
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 5 months ago by
Miguel
▴ 10 • written 21 months ago by
k.vitting.seerup
▴ 100
0
votes
7
replies
851
views
go_bp table in custom OrgDb package
annotation
go
pcaExplorer
AnnotationForge
updated 3.2 years ago by
James W. MacDonald
59k • written 3.2 years ago by
psutton
• 0
0
votes
1
reply
640
views
PCA on deseq2 gene data set
pcaexplorer
genespca
deseq2
updated 4.5 years ago by
Michael Love
37k • written 4.5 years ago by
sally_b86
• 0
0
votes
8
replies
1.4k
views
pcaEcplorer PCA2go function crashing
pca2go
pcaexplorer
updated 4.7 years ago by
Federico Marini
▴ 140 • written 4.8 years ago by
reubenmcgregor88
• 0
1
vote
2
replies
866
views
Error in pcaplot3d from pcaExplorer, when running Deseq2 since update of packages
deseq2
pcaexplorer
4.8 years ago
reubenmcgregor88
• 0
1
vote
2
replies
975
views
pcaExplorer error displaying PCA plot
pcaExplorer
pca
updated 5.5 years ago by
Federico Marini
▴ 140 • written 5.5 years ago by
swaegers.janne
• 0
9 results • Page
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Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
shepherl
3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt? ``` > makeOrgPackageFromNCBI( + version = "0.1", + …
Comment: CPM after RUVseq
by
Jess
• 0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Answer: NMF installation with current R version
by
shepherl
3.1k
Install the Biobase package ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::ins…
Answer: Creating DESeq object and choosing a contrast
by
Michael Love
37k
If you've read over the section on interactions and are still confused what these terms mean, I'd recommend consulting with a statistician …
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
Michael Love
37k
hi, Good question. So you can aggregate your swish isoform results to gene level (for which genes are there any significant isoforms) and …
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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