Bioconductor PcaExplorer

Showing : pcaExplorer • reset

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361

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DESeq2 RNASeq PrincipalComponent pcaExplorer

updated 6 months ago by oletaschmeler • 0 • written 6 months ago by James • 0

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494

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PCAtools pcaExplorer pcaMethods

updated 11 months ago by Federico Marini ▴ 150 • written 11 months ago by m610110001 • 0

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1.1k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

13 months ago Alan • 0

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1.1k

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 15 months ago by Federico Marini ▴ 150 • written 15 months ago by chase.mateusiak • 0

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22k

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DESeq2 pcaExplorer

updated 2.2 years ago by Michael Love 40k • written 2.2 years ago by vanbelj ▴ 20

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EDA pcaExplorer PCAtools PCA

updated 17 months ago by Miguel ▴ 10 • written 2.8 years ago by k.vitting.seerup ▴ 120

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1.2k

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annotation go pcaExplorer AnnotationForge

updated 4.2 years ago by James W. MacDonald 63k • written 4.2 years ago by psutton • 0

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840

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pcaexplorer genespca deseq2

updated 5.6 years ago by Michael Love 40k • written 5.6 years ago by sally_b86 • 0

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1.7k

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pca2go pcaexplorer

updated 5.8 years ago by Federico Marini ▴ 150 • written 5.8 years ago by reubenmcgregor88 • 0

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1.1k

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deseq2 pcaexplorer

5.8 years ago reubenmcgregor88 • 0

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pcaExplorer pca

updated 6.5 years ago by Federico Marini ▴ 150 • written 6.5 years ago by swaegers.janne • 0

11 results • Page 1 of 1

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…

Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

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Scholar to Mike Smith ★ 6.0k