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DEs
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0
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3
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 3 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
621
views
unreal negative log2fc values
DESeq2
des
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Atul K.
• 0
2
votes
9
replies
1.8k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Alexandre
• 0
0
votes
1
reply
617
views
Bioinformatics student
Des
DESeq2
updated 19 months ago by
hemantcnaik
• 0 • written 19 months ago by
Sahar
• 0
2
votes
2
replies
773
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
20 months ago
feather-W
• 0
0
votes
1
reply
888
views
Design structure
DESeq2
des
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
Devin
• 0
0
votes
1
reply
980
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
mike
• 0
0
votes
1
reply
1.1k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
heikki.sarin
▴ 10
8 results • Page
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Recent ...
Replies
Answer: Identifying differentially expressed genes in individual samples from a large co
by
Gordon Smyth
53k
Well, it makes sense to me in a descriptive sense, as a way to investigate your question. I'm not sure that the p-values can be considered …
Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
Stephen Piccolo
▴ 600
Thank you!
Answer: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
Guido Hooiveld
★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbni.…
Comment: Getting a large intercept with DESeq2
by
Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo
by
shepherl
4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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