Showing : DEs • reset
0
votes
3
replies
232
views
DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 10 weeks ago by ▴ 10
0
votes
1
reply
488
views
unreal negative log2fc values
DESeq2 des
updated 15 months ago by 68k • written 15 months ago by • 0
2
votes
9
replies
1.7k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
519
views
Bioinformatics student
Des DESeq2
updated 18 months ago by • 0 • written 18 months ago by • 0
2
votes
2
replies
742
views
With DESeq2 "Not full rank" Error with design
DESeq2 DEs
19 months ago feather-W • 0
0
votes
1
reply
852
views
Design structure
DESeq2 des
updated 2.9 years ago by 43k • written 3.0 years ago by • 0
0
votes
1
reply
961
views
Design Matrix Singularity Error
DES DESIGN
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
votes
1
reply
1.1k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 10
8 results • Page 1 of 1
Recent ...
Replies
Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Matej • 0
Popular Question to Hervé Pagès 16k
Popular Question to Josef Frank • 0
Popular Question to dan.gatti • 0
Locations • All
USA, 6 minutes ago
Albania, 19 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Germany, 1 hour ago
Traffic: 911 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6