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DEs
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349
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 5 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
681
views
unreal negative log2fc values
DESeq2
des
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Atul K.
• 0
2
votes
9
replies
2.0k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
Alexandre
• 0
0
votes
1
reply
658
views
Bioinformatics student
Des
DESeq2
updated 21 months ago by
hemantcnaik
• 0 • written 21 months ago by
Sahar
• 0
2
votes
2
replies
833
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
22 months ago
feather-W
• 0
0
votes
1
reply
946
views
Design structure
DESeq2
des
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
Devin
• 0
0
votes
1
reply
1.0k
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
mike
• 0
0
votes
1
reply
1.3k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
heikki.sarin
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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