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James W. MacDonald
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written 14 months ago by
Atul K.
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James W. MacDonald
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written 4.7 years ago by
heikki.sarin
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴
200
I would like to clarify whether the command
`res <- results(dds, name = "phaseLP.conditionTreated")`
is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴
10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴
200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs.
```
# Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID
```
> select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL")
'select()' retu…
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