Bioconductor DEs

Showing : DEs • reset

votes

replies

349

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des DESeq2

written 5 months ago by fedor.bezrukov ▴ 10

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681

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DESeq2 des

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by Atul K. • 0

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2.0k

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by Alexandre • 0

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658

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Des DESeq2

updated 21 months ago by hemantcnaik • 0 • written 21 months ago by Sahar • 0

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833

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DESeq2 DEs

22 months ago feather-W • 0

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946

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DESeq2 des

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by Devin • 0

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1.0k

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DES DESIGN

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by mike • 0

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1.3k

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DESeq2 DES

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by heikki.sarin ▴ 10

8 results • Page 1 of 1

Recent ...

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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Votes

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

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