Showing : DEs • reset
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 3 months ago by ▴ 10
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648
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unreal negative log2fc values
DESeq2 des
updated 17 months ago by 68k • written 17 months ago by • 0
2
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9
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1.8k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 19 months ago by 68k • written 19 months ago by • 0
0
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634
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Bioinformatics student
Des DESeq2
updated 20 months ago by • 0 • written 20 months ago by • 0
2
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2
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785
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
21 months ago feather-W • 0
0
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907
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Design structure
DESeq2 des
updated 3.0 years ago by 43k • written 3.1 years ago by • 0
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1
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996
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Design Matrix Singularity Error
DES DESIGN
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
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1.2k
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 10
8 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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