Showing : DEs • reset
0
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3
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319
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 4 months ago by ▴ 10
0
votes
1
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662
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unreal negative log2fc values
DESeq2 des
updated 18 months ago by 68k • written 18 months ago by • 0
2
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9
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1.9k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
1
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646
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Bioinformatics student
Des DESeq2
updated 21 months ago by • 0 • written 21 months ago by • 0
2
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2
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809
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
21 months ago feather-W • 0
0
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1
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924
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Design structure
DESeq2 des
updated 3.1 years ago by 43k • written 3.2 years ago by • 0
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1
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1.0k
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Design Matrix Singularity Error
DES DESIGN
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
0
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1
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1.2k
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 10
8 results • Page 1 of 1
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Replies
Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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